Bdellovibrio sp. KM01: HW988_04250
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Entry
HW988_04250 CDS
T08445
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HW988_04250 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_04250 (ligD)
Enzymes [BR:
bdk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HW988_04250 (ligD)
DNA repair and recombination proteins [BR:
bdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HW988_04250 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QLY26249
LinkDB
All DBs
Position
complement(849885..852290)
Genome browser
AA seq
801 aa
AA seq
DB search
MSLAKYNRKRDFKITKEPPGKIKKSGKGALSFVVQEHHASHLHWDFRLEWEGVLKSWAVP
KGPSMDPHTKRLAVETEDHPLSYGSFQGTIPEDQYGGGEVYIWDKGTWVPEEDAAKGFKK
GHLVFSLKGKKLKGVFHLVRTRTPGRSSQWLLMKKDDAFAEAVPDIKPVAAKKTVKKKAF
RKSGKVAKLPFVTPELALLVDEPPEGKEWLHELKFDGYRIQAHVNGDEVKLFTRSGQDWT
AKFPVIERDLQKLDVEGAVIDGEIVILDSSGRSDFQLLQNALKSNRAQNMYLYAFDLLAI
NGKDLRTRPLEQRRDELIKIFKKSAGRIRYSEEYQGTGKSLLAQAKKHGLEGIISKKRNS
TYRSERNSNWLKIKCSEQQEFVIGGYTLGKGSRDHFGALLLGVYKKDKLQYVGKVGTGFT
QQSLRDVFNTLKPLETKQSPFDIKSPKGRDYHWLKPKYSAEITFSNWTHEEILRVPVFNG
LREDKPTKQINKETPMALKSSEEWPISSPDKILFAKEKITKRQVANFYAKVAEHILPLIT
DRPLSLVRCPNGTGKQCFFQKHQAKIPESMTPVKMKEHGGYGTYMSVHDDAGLAALVQMN
AFEIHCSNSRHPETAVPDQFVIDFDPGPRVDWKTVVDSAFTLKKLLEGLGLKSFVKLSGG
KGVHVHVPIVPIYTFDQINSFTHALALQMEQQDPDLFVSKMSKKIREGRIFVDYLRNSQG
ATAVAPYSLRARAISAVAMPVTWSDLKKIPGGDYYDLKKALAHLQRRRSDPWQGYLKLQQ
RIELLDKATTKKSSTRTQAHL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagcgaaatacaatcgaaagcgcgattttaagatcaccaaggagcctcctggc
aagatcaagaagtccggcaagggagctctatcgttcgttgttcaggaacatcacgctagc
catcttcattgggactttcgcttggaatgggagggcgtcctaaaaagttgggctgttcct
aagggtcccagcatggaccctcacacaaaacggctggctgttgaaaccgaagaccatcct
ctctcctatggttcatttcagggaactattccagaagatcaatacggtggtggtgaagtt
tatatttgggacaaaggtacttgggtgccagaagaagacgccgccaaggggtttaagaaa
ggccatctcgtattttccctgaaaggaaaaaaactgaaaggcgtttttcacttagtgcga
acccgcactccaggtcgcagcagccaatggctcttaatgaaaaaggatgacgcttttgca
gaagccgttccggatatcaaacccgtagctgccaaaaaaacggttaaaaaaaaagccttc
cgaaaatcgggaaaggtcgcaaagcttcccttcgtaactccggaactagctcttctagtc
gacgagcctcctgaaggtaaagagtggttgcacgaattaaaattcgacggctatcgcatc
caagcgcacgtaaacggtgacgaagtcaaactcttcactcgctcgggacaagactggacg
gcgaaatttccggtgattgaaagagatctgcaaaagctggatgtcgaaggtgccgtcatt
gacggggaaattgtgatccttgacagttccggtcgcagcgatttccaactcttacagaat
gccctaaaaagcaaccgggcccagaatatgtatctttatgcctttgatctgttagctatc
aatggaaaggatctgcgcacccgacctttggaacaacgtcgcgatgaactgataaaaata
tttaaaaaatctgccggccgcattcgctacagcgaagaataccaaggcaccgggaaaagt
cttttggctcaggccaaaaagcacggcttagaaggaattatctccaaaaaaagaaacagc
acttatcgatccgaacgaaattccaattggcttaaaataaaatgcagcgaacaacaggag
ttcgttatcggcggctacactttaggaaaaggcagccgcgatcactttggtgcgctcctt
ctgggagtttacaagaaagataaactgcaatacgtgggtaaagtcggcacgggatttaca
caacaatccttgcgagacgtctttaatactttgaagcccctggaaaccaaacaatctcct
tttgatatcaaatcccctaagggtcgcgactaccactggttaaaacccaaatacagtgcc
gagatcactttttccaattggacccatgaagaaatcctgcgcgtccctgtttttaatgga
ctgcgtgaagacaaacctacgaaacaaattaataaggagacgccaatggcacttaaatcc
agtgaagaatggcccatctccagtcccgacaaaattctgttcgcgaaagaaaaaatcact
aaacgtcaggttgcaaatttttatgccaaagtagcagaacacattttgcctctcatcacg
gaccgtccgttgtcattggtgcgttgcccgaatggcaccggcaaacagtgcttctttcaa
aaacaccaagccaagatcccagaatccatgaccccggtgaaaatgaaagagcacggaggt
tatggcacctacatgagtgttcacgacgatgcagggcttgcggcattggtacaaatgaat
gcttttgaaattcattgttcaaattcccgccaccctgaaaccgccgtgcccgatcaattc
gttatagatttcgatcccgggccacgtgtcgactggaaaaccgtcgtggactcggctttc
actcttaaaaagctcttggaaggactgggcctaaaaagcttcgtcaaactgagcggcgga
aaaggagttcacgtccacgtccctatcgtcccgatttatacgtttgatcaaatcaacagc
tttacccacgccttggctttacagatggaacaacaagatccggatcttttcgtttcaaag
atgtctaaaaagattcgcgaaggtcgcatttttgtcgactaccttagaaactctcaagga
gccacggcggttgcaccttattcacttcgcgctcgtgcgatcagtgccgtcgccatgcct
gtcacctggagcgatctaaaaaagattcccggcggagattactatgatttgaaaaaggcc
ctggcccaccttcaacgtcggcgcagtgatccttggcaaggttacttaaagttgcagcaa
cgaattgaactcttggataaagcgaccaccaaaaaaagctccactcggactcaagcgcat
ttatga
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