Bdellovibrio sp. KM01: HW988_06970
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Entry
HW988_06970 CDS
T08445
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW988_06970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdk03019
]
HW988_06970
03009 Ribosome biogenesis [BR:
bdk03009
]
HW988_06970
Enzymes [BR:
bdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HW988_06970
Messenger RNA biogenesis [BR:
bdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW988_06970
Ribosome biogenesis [BR:
bdk03009
]
Prokaryotic type
rRNA helicases
HW988_06970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QLY27341
LinkDB
All DBs
Position
complement(1417468..1419327)
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AA seq
619 aa
AA seq
DB search
MDAMKDMGFSTPTPIQKQAIPLLLGGANDFIGLASTGTGKTAAFGIPLIENLDATIKDTQ
ALVLSPTRELALQVAEQLALLGKKKGIRVVTIYGGASYRTQIDGIKRGAHIVVATPGRLV
DFLEQKMLKLSKVQTVILDEADEMLSMGFKDALDFILSATHPDDAASNERAACRTWLFSA
TMSTEVRRITEKYLENPETVAVNKVGSTADTIDQVYYTVKNMHKTEVISRLLQTLPEFYG
IIFCQTKMEVAELSDILAQRGFPTDSLHGDKSQQEREATLKKFKSKQVKVIVATDVAARG
LDIKDLTHVVNYNLPWDAESYVHRIGRTGRNGQKGTAITLVNSDQLTLLRRIMNTTKATF
TKGVVPSADEVAGLKIKNVLDKVGSMDVANPSLLLAADLIQDLVQADDINFKDLSTEDLL
ARFIVAYFPDVFVKKDLILDYMGDRIPRELLPRDPNNNRFTSNRDGGGDRGGYRDRPRTG
GGYRGDRGGFRSNRRDDGDRPRFNDGGYQHDNNGKGASAPRRAPGASSAFRSADAGGEVR
AERSSSARTERYDREEGRGNRAPAGDNGGGERSFRKRSFSSDRDENRGNRPERSERADHP
GIKRSRPGGGSSAPRRFRD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgatgaaagacatgggcttctcaactccgacgcccattcaaaaacaagctatt
cctttgctattaggcggtgcgaacgatttcatcggtcttgcatctacagggactggtaaa
actgctgcgttcggtattcctcttatcgaaaatctagacgctacaatcaaagacactcaa
gctcttgttctttctccaactcgtgagttggcgctgcaagtggcagagcaattggctttg
cttggtaagaaaaaaggcatccgcgtagtcacaatctacggtggtgcttcctaccgcaca
cagatcgatggcatcaaacgtggcgcccacatcgtggtagcgacaccaggccgtttggtt
gatttccttgaacaaaaaatgttgaaactttctaaagttcaaactgtgatccttgacgaa
gctgacgaaatgctttcgatgggtttcaaagacgctttggatttcatcttgtctgcaaca
catccagacgacgctgcttcaaatgagcgcgcagcatgcagaacttggttgttctctgca
acgatgtccactgaagttcgccgtatcactgaaaagtatttggaaaatccagaaacagtg
gctgtgaacaaagtcggctctacggctgacactattgaccaagtttactacacggttaag
aacatgcacaaaacagaggttatctctcgcttgttgcaaactttgcctgaattctacggt
atcatcttctgccaaactaaaatggaagttgctgaactttctgacattttagctcaacgt
ggatttccaacagactctttgcatggtgataaatcccagcaagagcgcgaagcgactttg
aaaaaattcaaatctaaacaagtcaaagtcatcgttgcaacagacgtagccgctcgtggt
ttggacatcaaagaccttactcacgtggtaaactacaacttgccatgggatgctgaatct
tatgttcaccgtatcggtcgtacaggtcgtaacggtcaaaaaggaacagcgatcactttg
gtgaactctgatcaattgactcttcttcgccgtatcatgaatacgacgaaagcgactttc
acgaagggtgttgtaccttctgctgatgaagttgctggtcttaaaatcaaaaacgtattg
gacaaagttggttcaatggacgttgccaatccatctttgcttttagcagcggatttgatc
caggacttggttcaagctgatgacattaacttcaaggatctttcaactgaggatttgcta
gctcgctttatcgtggcttacttcccagacgtatttgttaaaaaagatttgatccttgat
tacatgggcgaccgcatccctcgtgaattgttgcctcgtgacccgaacaacaaccgcttc
acttctaaccgtgacggtggtggtgatcgtggtggttaccgtgaccgtcctcgcactggt
ggcggctaccgtggtgaccgtggtggtttccgtagcaaccgtcgtgatgatggcgaccgt
cctcgttttaacgacggtggttaccaacatgacaacaacggtaaaggtgcttcggctccg
cgccgtgctcctggcgcaagcagtgcattccgcagtgctgatgctggtggtgaagttcgt
gcagaacgcagtagcagcgcacgcacggaacgttatgaccgtgaagaaggccgtggtaac
cgcgcacctgctggtgacaacggtggcggcgaacgttctttccgcaaacgttcattcagc
agcgaccgcgatgaaaatcgtggcaaccgccctgagcgttctgagcgcgcggatcaccca
gggatcaaaagatctcgcccaggtggcggctcttcagctccccgtcgtttccgtgattaa
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