Bdellovibrio sp. KM01: HW988_07615
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Entry
HW988_07615 CDS
T08445
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW988_07615 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdk03019
]
HW988_07615 (pnp)
03016 Transfer RNA biogenesis [BR:
bdk03016
]
HW988_07615 (pnp)
Enzymes [BR:
bdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HW988_07615 (pnp)
Messenger RNA biogenesis [BR:
bdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HW988_07615 (pnp)
Transfer RNA biogenesis [BR:
bdk03016
]
Prokaryotic type
tRNA degradation factors
HW988_07615 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
DUF3016
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QLY26854
LinkDB
All DBs
Position
1554776..1556875
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AA seq
699 aa
AA seq
DB search
MKTTVTTSVGGKQITIETGRMAKQADGSVLVSSGNNMVIVTAVSSKKPSEMDFFPLTVEY
IEKYYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPSFPEGYRYETQVVATVLSADGS
FPLEILASLGASAALHVSDIPFNGPTAAVQIARVDGQFIANPTPQQMEKSDMDMIVAGTR
NGLLMVEGETKFISEADALAALKFGHQALIPLLNAQDELREKTGSVAKRAYTAPSIDADF
KSSAEAFLQPKIAAALAIKEKQDRYAASAAAASEAEKTLLASITDKDLLKQRKKELNTII
EDLKYKEARSMILDRKVRIDGRNTTTVRPVANEVGILPRAHGSGLFTRGETQVLGTVTLG
TGDDEQMVDSLLGVQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERALKAVLPD
HEKFPYTIRIVSEVLESNGSSSMGTVCSGLMALLDAGVPVKGNVAGVAMGLIKEGDRVAV
LTDILGDEDHLGDMDFKVAGTAQGITAVQMDIKIDSVSFEVMEQALSQAKDGRIHILNEM
EKVMKTPRGQISEFAPRIETIKIRPDKIREVIGSGGKVIRGITEATGVKIEIEDDGTIHI
ASADPEATKKAIGMINDIVAEAEVGKTYKGRVVKIAEFGAFVEILPNTQGLLHISEISNE
RVRAVTDVLKEGETIDVKVLEVDRAGRVKLSRKALLQQQ
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgactgtaactacttctgtaggtggaaaacagatcacaatcgaaacaggccgt
atggcaaaacaagctgatggatcagtacttgtttcttctggtaacaacatggttatcgtt
actgctgtttcttctaaaaaaccttcagagatggacttcttccctctgactgttgaatac
atcgaaaaatactatgcaactggtaaaattccaggtggttacttcaaacgtgaagctaaa
ccaacaaacgacgcggttctaattgctcgcttgatcgaccgtccaatccgtccttctttc
ccagaaggctaccgctatgaaactcaagttgtggcgactgttctttctgctgacggttca
ttccctcttgaaatcttggcaagtttgggtgcttctgcagcccttcacgtatctgatatt
ccattcaacggcccaacggcagcagttcaaatcgctcgcgttgacggtcaattcatcgcc
aacccaactccacaacaaatggaaaaatccgacatggatatgatcgttgcgggtactcgc
aatggtttgttgatggttgaaggtgaaacgaaattcatctctgaagcagatgctttggca
gcgttgaaattcggtcaccaagcattgatccctcttttgaatgcgcaagatgaattgcgt
gaaaaaacgggttctgtagctaaacgcgcttacacagctccttctattgatgcagatttt
aaatcttctgctgaagctttcttgcagcctaaaatcgcagcagcgcttgcgatcaaagaa
aaacaagatcgttacgcagcatctgcagcagcagcttctgaagctgaaaaaactttgttg
gcttccatcactgacaaagatcttttgaaacaacgtaaaaaagaactcaacacaatcatc
gaagatcttaaatacaaagaagctcgttcgatgatcttggatcgcaaagttcgtatcgac
ggtcgtaatacgacaactgtacgtcctgtagcgaacgaagttggtatcttgccacgtgct
cacggttcaggtctattcactcgtggtgaaactcaagttttgggcacggtgactttgggt
actggtgacgatgaacaaatggttgattcattgttgggcgttcaaaaacgcaaatttatg
cttcactacaacttccctccatactctgtaggtgaagtaggtcgtatgagcggtacttct
cgtcgtgaaatcggtcacggtaacttggctgaacgcgctcttaaagcggttcttcctgac
catgagaaattcccatacacaatccgtatcgtatctgaagttttggagtctaacggttct
tcttcaatgggtactgtatgttctggtttgatggctcttcttgatgcgggtgtacctgtt
aaaggaaacgttgccggtgtggcaatgggtctaatcaaagagggcgaccgcgtagcagtc
ttgacggacatcttgggtgatgaagatcacttgggtgacatggactttaaagttgcaggt
actgctcaaggtatcacagctgttcaaatggatatcaaaattgactctgtatctttcgaa
gttatggaacaagcgttgtctcaagctaaagacggccgtatccacatcttgaacgaaatg
gaaaaagtgatgaaaactcctcgtggtcaaatctctgaatttgctccacgtatcgagact
atcaaaatccgtccagacaaaatccgcgaagttatcggatctggtggtaaagttatccgt
ggtatcactgaagcgactggcgttaagatcgaaatcgaagacgacggtacaatccacatt
gcatccgctgatcctgaagcaactaaaaaagctatcggcatgatcaacgacatcgtggca
gaagctgaagttggtaaaacgtataaaggccgcgtagtaaaaatcgctgaattcggagct
ttcgttgaaatccttccgaacactcaaggtttgttacacatctctgagatctctaacgag
cgcgttcgcgccgtaacagacgttcttaaagaaggcgaaactatcgacgtaaaagttctt
gaagttgaccgtgcaggtcgcgtgaaactttctcgcaaagctttgttgcaacaacagtag
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