Bdellovibrio sp. KM01: HW988_08275
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Entry
HW988_08275 CDS
T08445
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03410
Base excision repair
bdk03430
Mismatch repair
bdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HW988_08275 (recJ)
03430 Mismatch repair
HW988_08275 (recJ)
03440 Homologous recombination
HW988_08275 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_08275 (recJ)
DNA repair and recombination proteins [BR:
bdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HW988_08275 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HW988_08275 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HW988_08275 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QLY27362
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Position
1691048..1692775
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AA seq
575 aa
AA seq
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MNPLWKLRESDTEVATPSKVEGQWPSLIGKLLAARGFTQPQEVEKLLFPKLVDLKDPLLL
KGMSQALERLGQAYLNKEKICIYADFDLDGTSGLALLKTGMQALGFTEVLHYQPKRLSEG
YGFHAAAVEELKSQGVSLIITVDVGITAHAAIDKARELGVDVILTDHHLPAETLPQAYVI
INPNQGTCESGLGYLCGAGVAFYLLRGLKRYFHDHAELPKSKWDLKEVLDYFTIGTLTDM
VPLVDDNRVLVKHGLVKLAETKRAGLRALLEELDLQDRALTSQDVAIRFAPKLNALSRME
SGILPIDIFLLDDVSKARDMVRQVMKNNSTRVQLQSDAETEAQELLKEWPHKDFVFVASP
NFHRGVVGLIATKLTQVYNKPAFVGSVGTDGMIVGSARLPQGQEACLVEAMGSAAELMSR
FGGHSAAAGFEIAETKVAQFVDRLSGHFSDLREKPKPLEIFYDVQASLPEVSASLMKWYD
FVGPFGAGFAIPLIHFSNIQILSKRELKGGHLRLKLFDPDSNATMEALLFTPTPRQVETL
HTVPGFYDILGELQWNYFAGQKTIQILIRDLKAMS
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccattgtggaagttaagagagtcagataccgaggtggcaacaccttcaaaagtc
gaggggcaatggccgtccttgattggtaagctcttggctgcgcgtggattcactcaaccc
caagaggttgaaaagctgttatttccaaagctcgtggatttgaaagatcctcttttgtta
aaggggatgtctcaagcactggagcgtctgggccaagcttatctgaataaggaaaaaatc
tgcatttatgcggattttgatttggatggtacttcagggctcgcgcttttaaaaaccggg
atgcaggctttaggttttactgaagttttgcattatcagcccaaacgtttgtctgaaggt
tacggctttcatgcggcagcggttgaggagctaaagtcccagggtgtgtctttgattatc
accgttgacgtgggtatcacggctcatgcggcgatcgataaggctcgcgagctaggtgtg
gatgtgatcctaacggaccatcacttgccggcggagactttacctcaagcctacgtcatc
attaatcccaatcagggaacttgtgaaagtggtttaggttatttgtgtggcgcgggtgtt
gctttttatctgcttcgtggattaaaaagatactttcacgatcacgcagaactacctaaa
agcaaatgggatttaaaagaagtcttagattactttacgatcggtactttgaccgacatg
gtcccattggttgacgataatcgcgtgttggtaaaacacggtctggttaaacttgccgag
acgaaaagagccggacttcgagcactacttgaagagttggatttgcaagatcgtgcatta
accagccaagatgtggcaatccgttttgctcccaaattaaatgctctttccagaatggaa
tcggggattcttccgattgatatctttctattagacgacgtttctaaagctcgcgacatg
gttcgtcaggtgatgaagaacaactcgacgcgggttcagctccaaagtgatgcggaaaca
gaagctcaagaattacttaaagagtggccacataaagactttgtatttgtggcatctcca
aacttccatcgcggggtggtgggtttgatcgcaacgaagctgactcaagtttataacaag
ccagcttttgtcggttcagtggggacagacggtatgatcgtcggatccgctcgtttgcca
caaggccaggaagcttgtctggtcgaagcgatgggttcggctgcagagttgatgagtcgt
tttggtggtcactcggcggctgcggggtttgaaatcgcagagacgaaagtcgctcagttt
gtagatcgcttgagtgggcatttttcggatcttcgcgaaaagccgaagccattagaaatc
ttttacgatgttcaagcaagtcttccggaagtcagcgctagcctgatgaagtggtatgat
tttgtcggtccttttggggcggggtttgcgatcccattaattcatttttcgaatattcag
attttatctaagcgtgagcttaagggtggtcatctgcgcttaaagttgtttgatcctgat
agcaacgcgacgatggaagccctgttatttacaccgactcctcgtcaggtggaaactttg
cacacggtgccgggtttttatgatatcttaggggagcttcagtggaattactttgctggg
caaaaaacaattcaaatcctgattcgtgatctgaaggccatgtcatga
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