Bdellovibrio sp. KM01: HW988_09335
Help
Entry
HW988_09335 CDS
T08445
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03030
DNA replication
bdk03430
Mismatch repair
bdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HW988_09335 (dnaE)
03430 Mismatch repair
HW988_09335 (dnaE)
03440 Homologous recombination
HW988_09335 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdk03032
]
HW988_09335 (dnaE)
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_09335 (dnaE)
Enzymes [BR:
bdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HW988_09335 (dnaE)
DNA replication proteins [BR:
bdk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HW988_09335 (dnaE)
DNA repair and recombination proteins [BR:
bdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HW988_09335 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QLY27166
LinkDB
All DBs
Position
1905457..1908993
Genome browser
AA seq
1178 aa
AA seq
DB search
MSFVHLHVHSEYSLLEAACRVKAIAKKAAAMNMPAAALTDNGNMFGAVEFYFACKDNNVK
PLLGLDAYLAPGSRLEKKQDRDQVAQGPRRLVFLAQNTKGYQNLCKLSTIGYQEGFYWKP
RIDYEVIKEYNSDLICLTGGLRGEVAEAFMKEGADAALAKIRQLKEIFDDRLYLEMCRTG
VPEWDQINPFLLEASKITGVPVVASNDVHYMTQDDQIAQEVLICIGTNKTLSDESRFRLG
TDEFYFKKPEQMVELFSDIPEAISNTLQIAERCDVKFKLKDDAGKPIYHLPTFPTDEGVT
LKEDIARRSKEGLLLRFEEAAERGEPVPEEKKPEYYTRLDYELGIIDRMGFNGYFLIVQD
FIGWAKDNDIPVGPGRGSGAGSLVAYVLKITDLDPLPNFLLFERFLNPERISMPDFDIDF
CQDRRQEVIRYVTQKYGQASVSQIITYGKLQTRAALKDVGRVLGMLFAEVDQVTKLIPDK
LGISLKESLEMEPRLTEMMEMNPTVATLIDLAQRVEGMVRNAGIHAAGVIIGDGQLVKHA
PLYKGADGEQVVQYDMKHAEKIGLIKFDFLGLKTLTHINMALKLIKKNRGKTITSRMIPM
TDTATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADITAITSLYRPGPMANIPDFTD
RKHGKAPVEYLLEDTKEVLSETYGIMVYQEQVMGIASRIAGYSLGEADMLRRAMGKKIKE
EMDQHRERFMKGAIERGHNKERSSDLFDLMYKFADYGFNKSHAAAYSVVTLQTAWLKCHY
PVEFFAALLSTELSDTEKIVKYSKDAAKRGITVKSPHVNFSEYFFGAHGDEVYFGLGGIK
GVGQNAVEAIVEARENMPDKKFNSLDEFFNAIDLRRVNKKVIECLIKAGAFEGFGAHRAQ
LMAGYQKFLDRAQGLQKDRELGQSSLFDLGPSTETIVKLEEVKPWSRTASLAYEKEVLGF
YLSDHPLKGFDTLSEIFTSCKIVDLPAQMPAQGSPEWEAMQAAKKDWKNRDAAKKRVVVA
GLITELRELITKKGTRMAFGKVEDLTGAVELVIFPDAFAKNGEMLKDERPMLIGGGLEVE
EGVAKIMVDSVSPLEDILKKTKRMVFRLDRIPHEDYGRLKSLMTENPGPTAVSLEIDIPD
VSRRVMMDIGEGSGVNVSNEFFEGVHSLFGRTDFIELR
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgttcatttacatgtccattctgagtactcccttttagaagctgcttgccgg
gtcaaagcgatcgcgaaaaaagcagctgcgatgaatatgcctgctgccgcattgacggat
aacgggaacatgtttggcgctgttgaattttactttgcctgtaaagacaacaacgtcaaa
ccactgttgggattggatgcgtatcttgctccaggatcacgtttagagaaaaaacaagat
cgtgatcaagtggctcaagggcctcgtcgcctggtgttcttggcgcaaaataccaagggc
tatcaaaatctttgtaagctttcgacaattggttaccaagaaggtttctactggaagccg
cgtatcgactacgaggtgatcaaagaatataattctgatttgatctgtttgacgggtgga
cttcgtggtgaagtcgcagaagccttcatgaaagaaggtgctgatgcggctttggcgaaa
atccgtcaactgaaagaaatctttgatgaccgcttgtatttggaaatgtgccgtaccggt
gttccagagtgggatcaaatcaatccgttcttgctggaagcttcaaaaatcacaggtgtc
cctgtggtggctagtaatgatgttcactacatgactcaagacgatcagatcgcccaagag
gtgttgatctgtatcggaaccaataaaactttgagtgatgaaagccgtttccgcttggga
acggatgaattctattttaaaaaaccagagcaaatggttgagttgttctctgatattcca
gaggctatcagcaatactttgcaaatcgcagaacgttgcgatgtgaaattcaaacttaaa
gacgacgcgggtaagccgatttatcacttgccaacattcccgacagacgaaggtgtgact
ttgaaagaagacatcgcacgtcgttctaaagaaggtttgctgctgcgttttgaagaagct
gctgaacgaggtgaacctgtaccagaggaaaaaaagcctgagtactacacgcgcttggat
tatgagcttggtattatcgatcgtatgggattcaatggttacttcttaatcgtccaagac
ttcatcggttgggcgaaagataacgacatcccggtgggccctggtcgtggttccggtgcc
ggctccctggttgcttacgttttaaaaattacggatttggatccacttccaaatttcctt
ctgttcgagcgtttcttgaatccagaacgtatttcgatgcccgacttcgatatcgacttc
tgtcaggatcgtcgtcaggaagtgatccgttatgtgactcagaagtacggacaggcttca
gtttctcagatcatcacttacggtaaattgcaaactcgtgccgccttgaaggacgtgggc
cgcgttctgggaatgcttttcgcggaagtggatcaagtaacaaaattgattccagataaa
ttgggtatcagtctgaaagaatctctggaaatggagcctcgtctgactgagatgatggag
atgaatccaacggttgcgactttgatcgaccttgcacaacgtgtggaaggtatggttcga
aacgcgggtatccatgctgccggtgttattatcggtgatggtcagttggtaaagcatgcg
cctttgtataaaggcgctgatggcgagcaagtcgtacaatacgatatgaagcatgccgag
aaaatcggtttgatcaaattcgacttcttgggattaaagactctgactcacatcaacatg
gctttgaaacttatcaaaaagaatcgtggcaagacgatcacttcacgcatgattccgatg
accgataccgccacttttgaaatgatgtcacgtggtgatacagcgggggtatttcagttc
gagggtgagggtatcaccgatgccactcgtaaaatccgtccgtcgtcgtttgccgatatc
acagcgatcacgtcgttgtaccgtccaggtccgatggcgaacattcctgactttaccgat
cgtaaacacggaaaagctccggttgaatacttgcttgaagataccaaagaagttttatca
gagacttacggtatcatggtttaccaagagcaagttatgggtattgcctctagaattgcc
ggttactctctgggcgaagccgacatgcttcgtcgtgcgatgggtaagaaaatcaaagag
gagatggatcagcaccgcgaacgtttcatgaagggtgcgatcgaaagaggccacaacaaa
gaacgttcctcagatctttttgatttgatgtataagttcgcggactacggtttcaataaa
tctcatgccgctgcatattctgttgtgacgttgcagacggcttggttgaaatgccattat
ccggttgaattcttcgcggcacttctatctaccgagttatctgatacagaaaaaatcgta
aaatactccaaggatgctgcaaaacgcggtatcacagtgaaatcaccgcatgtgaatttc
tcagaatacttctttggtgctcatggggacgaagtttacttcggtctgggagggatcaaa
ggtgtggggcaaaatgcggtggaggcgatcgtcgaagcccgtgaaaacatgccagacaaa
aagttcaactccctggatgagttctttaatgctatcgatcttcgccgtgtgaataaaaaa
gtgattgaatgtttgatcaaggccggtgcctttgaaggtttcggcgcgcatcgtgcacag
ttaatggcgggatatcagaaatttctggatcgcgctcaaggtttgcaaaaggaccgtgag
ttggggcaatcctcccttttcgatctggggccttcgacggaaacgattgtgaaattggaa
gaagttaaaccatggagtcgtacggcttctttggcttatgaaaaagaagtcttgggtttc
tatttaagtgatcaccctttgaaagggtttgatactttgtcagagatctttacgtcttgt
aagatcgtggatttgccagcgcagatgccagctcaaggttcgcctgaatgggaggccatg
caggccgcaaaaaaagactggaagaaccgcgatgccgctaaaaaacgtgtggtggttgcc
ggacttattaccgagcttcgcgagcttattacaaaaaaaggcacgcgtatggctttcggt
aaggtcgaagatttaaccggagcggtggagttagttatcttccctgatgcatttgcaaaa
aatggcgagatgttaaaagacgagcgtcccatgttgattggtggtggtcttgaagtcgag
gaaggtgttgctaaaatcatggtggattcagtgtctccgctagaggatattctgaagaaa
accaagcgcatggtctttaggctggatcgtattccacacgaagactatgggcgtttaaaa
tcattgatgacggagaatcccggtccaacggcagtcagtctagaaattgatatacccgac
gtcagtcgccgtgtgatgatggatataggcgagggatccggagttaatgtcagcaatgaa
ttctttgaaggggtgcattccctttttggacgaacggattttattgaattgaggtaa
DBGET
integrated database retrieval system
