Bdellovibrio sp. KM01: HW988_18965
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Entry
HW988_18965 CDS
T08445
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HW988_18965
09124 Replication and repair
03420 Nucleotide excision repair
HW988_18965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdk03021
]
HW988_18965
03036 Chromosome and associated proteins [BR:
bdk03036
]
HW988_18965
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_18965
Enzymes [BR:
bdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HW988_18965
Transcription machinery [BR:
bdk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HW988_18965
Chromosome and associated proteins [BR:
bdk03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HW988_18965
DNA repair and recombination proteins [BR:
bdk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HW988_18965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
ATPase
MEDS
Motif
Other DBs
NCBI-ProteinID:
QLY25462
LinkDB
All DBs
Position
complement(3941566..3943980)
Genome browser
AA seq
804 aa
AA seq
DB search
MAKKNLRKIQIDLRQFALPCPRVGSIEAHSGYGQTPRLGQEIHQNIQRKRIREIPGYEAE
KKLSIEFERDQYLFVISGRADGVIEGSSFQVEEIKSAFDVESLEHKLTMDDNHPYVWQLR
TYGYILYKQTGEIPELKMLLVSSRNFKQSEIYFELDIEDYESWLALRLAELTEETKIREK
LFKKRVAAAEDLKFPFTSPRPGQTELIENIQLGFIEEKSMVIQAPTGLGKTIGVLYPSLK
DSLARGQKVIYVTPKNSQHQVAEEAVEKLQDQGASIRPLTITAKSKMCFKAEPLCNPQYC
EFAKDYYKKLAENDLVNKVTKLRSLSQAKLQELGEQYQVCPFELSLEAIERADVVIADYN
YVFSTRSLLGRLELPLMEPTQKANLVIDEAHNLPARAQDYFSPAISTRDLQNIIPSLGKI
NIRFQKRAQMLCEEAIELIETYRGESRTVVIDFDPVFELESRMREFLGEYLEADIEIQTQ
DGVLRLANMWSDFAQALELQGPEFFQTYQKNRLYGEINETLKVTCCDASRHLNEIYKSFK
NVVAFSATLKPFTYSMKLLGFDEITTKCLEFVSPFPKEHRKILLIPQISTKFKDRPMNAP
KIAQAMEKIMAVKPGNYIALFPSFEFMKDVEGHLRDGSYQRLVQQREMKAARVDDFLSFM
KSADKPTLLMAVQGGIFSEGVDFPGDMLIGAFVVGPALPNFDFEREQIRQYYERSYDKGQ
AFNYTYVYPAMAKTIQSAGRVIRSENDKGIIVLMDSRFLETTYSETMPQGWFEQGAQELV
SGKIISDVTDFWKSLEFSEGKVEA
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaacttacgcaaaattcaaattgatctgcgccagtttgccttgccatgt
cctcgggtgggcagtatcgaagctcattccggatacggacaaacccctcgcctgggacaa
gagattcatcagaacattcaaagaaaaagaattcgcgagattcccggttacgaagccgag
aagaaactttctatcgaatttgagcgcgatcagtacttgtttgttatctccggacgcgcg
gacggtgtaattgagggctcaagctttcaagttgaagaaatcaagtctgcgttcgatgtt
gagtcattggaacacaagcttacgatggatgataatcatccctatgtgtggcaactgcgc
acatacggctacattttgtataagcaaacgggtgaaattccagagcttaaaatgctttta
gtctcatcgcgaaactttaaacagtccgagatctattttgaattggacatcgaagattac
gaatcatggttggcgctgcgcttggcggaactcactgaagagaccaagatccgcgaaaag
ctatttaaaaagcgcgtggccgctgcagaggatctgaagtttccgtttacttcaccacgc
cctggccagacagagctgattgaaaatattcagttgggattcatcgaggaaaaatcgatg
gttattcaggctccgacaggcttgggtaagacaataggtgttttgtatccttccctaaag
gactctttagcgcgtggacaaaaggtgatctatgtaacaccaaagaattcccagcatcag
gttgccgaagaagcggttgaaaaactgcaggaccagggagcatcgatcagaccgctgacg
atcaccgcgaaaagtaagatgtgctttaaggctgaacctttgtgtaatccacagtattgt
gaatttgctaaggactattacaaaaaactggcagaaaacgatctggttaacaaagttacg
aagcttcgttcgttaagccaggcaaaactacaggaattgggtgagcagtaccaagtgtgc
ccttttgaattgtctttagaggcgattgaaagagcagacgtggtcatcgctgactataac
tatgttttttcaacacgaagcctattaggacgcttagagctgcctttaatggagcctacc
caaaaagcaaatctggtgatcgatgaagctcataacttgccggcgcgggctcaagattat
ttttcgccggcgatttcaacgcgggatttgcagaacatcattccgtcactaggaaaaatc
aacattcgctttcaaaagcgggcacagatgctttgcgaagaagcgattgaactgattgaa
acctaccgtggtgaatctcggacagtggttattgattttgatcctgtctttgaacttgaa
tccagaatgcgtgagttcttgggcgaatatctggaagccgacatcgagattcaaacgcaa
gacggagttttgcgtctggcaaatatgtggagtgactttgcacaagcactcgaactccag
ggcccggaattttttcagacgtaccaaaagaatcgcctctatggtgaaatcaacgagacc
ctgaaggtgacttgttgtgatgcctcaaggcacctaaatgaaatttacaaatcatttaaa
aatgttgtcgcattctctgcgacgctaaagccgtttacttattccatgaagcttttaggt
tttgatgaaatcacgactaaatgtctcgaattcgtttctccattcccgaaagagcatcgc
aagattctactaattccgcaaatctcgacgaagtttaaagatcgcccgatgaacgcgcca
aagattgcgcaagccatggaaaagataatggcggtaaagcccgggaactatattgcactc
ttcccgagcttcgagtttatgaaagatgtcgaaggacatctccgagacggttcctatcaa
agattagttcaacaaagagaaatgaaagctgcgcgggtggatgatttcctgtcttttatg
aagagtgcggataagcccacattgcttatggcagttcagggcggaatcttttcagaaggt
gtggatttccccggtgatatgctgattggtgctttcgttgttgggccggcactgcctaat
tttgactttgagcgcgaacaaattcgccagtattacgagcgttcctatgataaggggcag
gcgtttaattacacgtatgtctatcccgccatggcgaagacaattcaatccgcgggccgc
gtaattcgctctgaaaatgacaagggaattatcgtcttgatggattccagatttttagag
acaacgtactcggaaaccatgccccagggctggtttgagcagggcgcccaggaattagtc
tctggaaaaatcatttctgatgtgacggatttctggaagagccttgaattttctgagggt
aaagtcgaagcgtga
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