Burkholderia dolosa: AK34_1177
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Entry
AK34_1177 CDS
T03793
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdl
Burkholderia dolosa
Pathway
bdl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AK34_1177 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdl03400
]
AK34_1177 (mfd)
Enzymes [BR:
bdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AK34_1177 (mfd)
DNA repair and recombination proteins [BR:
bdl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AK34_1177 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJY12116
LinkDB
All DBs
Position
1:complement(1264947..1268417)
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASNPPASPVPRVKPGQRYAFDGAHGSADALAIARYLADNRADVPLLAVICANAVDA
QRLSQEIGYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDDAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRATIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQNAHLVFAGDLDAAI
RRFTADTKQRYAFLAHDRERPILEPQRLFLSDEDFFTLAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDGFASWL
ASDERFALGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFVDRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHTPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGSKQPAASAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaacccgcccgcctcgcccgttccgcgcgtcaaacccggccag
cgctatgccttcgacggcgcgcacggctccgccgacgcgctcgccatcgcccgctatctc
gccgacaaccgcgcggacgtgccgctccttgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctgtcgcaggaaatcggctacttttcgccggacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtatcggagcgg
ctcgcgacgctgcacgatctcggcgagggccgctgcgacatcctgctggtgccagccacg
accgcgctgtaccggatgccgcccgcatcgttcatggccgcgtacacgttcgcgttcgcg
caaggcgagcggctcgacgacgcgaagctgaaggcgcagctcacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tatccgatgggctcgccgctgccgtaccggatcgacctgttcgacgatcaggtcgactcg
atccgcgccttcgatccggacacgcagcgcagcctgtatccggtgcgcgacgtgcggctg
ctgccgggccgcgaattcccgttcgacgaagcggcgcgcacggcgtttcgcagccgctgg
cgcgagacgttcgagggcgacccgagccgcgcgacgatctacaaggacatcggcaacggc
gtgccgtcggcgggcatcgagtattacctgccgctattcttcgacgagacggcgacgctg
ttccactatctgccgcagaacgcgcatctggtgttcgccggcgatctcgacgcggcgatc
cgccgcttcaccgccgacacgaaacagcgctatgcattcctcgcgcacgatcgcgaacgg
ccgatcctcgagccgcagcggctgttcctgtccgacgaagacttcttcacgctcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgaccgcgctgccc
gagctgacggtcgaccgccacgcggacgatccgctcgccgcactgcgcacgttcgtcgaa
tcgtccggcaagcgcgtgctgctgaccgtcgaatcggcgggccgccgcgagacgatcctg
caactgctcgccgagcatcatctgcgccccgcgtcgaacgacggcttcgcgagctggctc
gcgagcgacgaacgtttcgcgctcggcgtcgcgccgctcgcgagcggcttcgcggtgccg
ggcgaaggctacgcgatcgtcaccgagaccgagctgtacggcgcactcggccgccgcgcg
ggacgccgccggcaggagcaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgacccggtcgtgcatgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatacgcgggcgac
agcaaactgtacgtgccggtcgcgcaactgcacgtgatctcgcgctacagcggtgcggat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggaacgcgcgaagcgcaag
gccgcgcagcagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcgcgcgaaggtcatgcgttcgcgctcgatccgcgcgactacgtgaagttcgcggagagc
ttcggcttcgaggaaacgcccgatcaggccgccgcgatcgccgccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaa
gtcgcgctgcgcgcggcgttcatcgcggtaatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgaacagcacacgcagaccttcgtcgaccgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcgggctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctgaccgcg
acgccgattccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagacgttcgtgcgccgcgaagaggaaagc
gtgatccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggaactggtgcccgaggcg
cggatcgtgatcgcgcacggccagatgcacgagcgcgagctggaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgacgatcatcgaaaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctg
caccagctgcgcgggcgcgtcggccgctcgcatcaccaggcgtacgcgtatctgctcgtc
cacgatccgcagtcgctgaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggagctcggctcgggcttctacctcgcgatgcacgacctcgagatccgcggcaccggc
gaagtgctcggcgacaagcaatcgggcgagatccacgagatcggcttccagctttacacc
gacatgctcaacgatgcggtgaaggcgctgaagaacggcaaggagcccgatctcaccgct
ccgctcgccgccacgacggaaatcaatctgcatacgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctatacaagcgcctcgcgaactgcgaacacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcgccttgccgcgaaaccgctcgggatcgtg
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgaaacgcgttcgccggacctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcgggtcgaagcagccggccgcgagcgcggcgcgctga
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integrated database retrieval system
