Burkholderia dolosa: AK34_1934
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Entry
AK34_1934 CDS
T03793
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bdl
Burkholderia dolosa
Pathway
bdl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AK34_1934 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdl03400
]
AK34_1934 (recD)
Enzymes [BR:
bdl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AK34_1934 (recD)
DNA repair and recombination proteins [BR:
bdl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AK34_1934 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
RecD_N
SLFN-g3_helicase
AAA_22
MukB
DEAD
New_glue
Motif
Other DBs
NCBI-ProteinID:
AJY12256
LinkDB
All DBs
Position
1:complement(2080544..2082955)
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AA seq
803 aa
AA seq
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MNASDDMLEFTGGLVARLPEPADFGIALAEGFARRIGDLSRRAGAPPASARWAARAAFAT
SRATAGGHVCVSLAALAQRYDEPLDGVRAALAASGVVAFGALVRGDERPLIVDRHDRLYL
SRYFDYERRLADALVAQAGAAAPADALAPERLRDSLERYFGPATGEVDWQRVAAIVALTG
RVTIVSGGPGTGKTTTVVGVLACLLDAQPSLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDDPLPYDLIVVDEASMIDVALAAHLLDALAPG
ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARTRIAHALGIDEAAFVAALPVPDALA
AVVSEAGASVQNCASASASASASASASASASPSPSASASASASASASAPAATARKSSSRR
KIDTRQASLFDDEPSERQDDAAASPGAVSKPASASASVADEPAPVDSSDADVPPAWIEAD
ELAWLDAVELPPFDATDVAIGAPDASPLQHDETSSAHDARTAAPAPLADCVVWLERNYRF
GLDSPIGRLSLAIRRGDVQAALDALPADAAAAASFYDDAGDTLALATVERLASRFGAYLD
ALHDALAAPAPDPLPLFDALNRFRILCATRSGARGAEHVNALVAAHVRRAARLPLAVGAH
WFTGRPVMVTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAF
ALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAVTRARVRVQAIGARRVLAQAVATRT
QRDSGLAARIDEALARRRAEVPR
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgtcagacgacatgctggaattcaccggcggcctcgtcgcgcggctgccggag
ccggcggatttcggcattgcgctcgcggaagggttcgcgcgccgcatcggcgacctgtcg
cgccgcgccggcgcgccgcccgcatcggcgcgctgggccgcgcgtgccgcgttcgcgacg
agccgcgcgaccgccggcggccacgtgtgcgtgtcgctcgcggcgctcgcgcagcgctac
gacgaaccgctcgatggcgtgcgtgcggcgctcgcggcgagcggcgtcgtcgcgttcggc
gcgctcgtgcgtggcgacgagcggccgttgatcgtcgaccggcacgatcggctgtacctg
tcgcgctatttcgactacgagcggcggctggccgacgcgctcgtcgcgcaggcgggcgcc
gccgcgccggccgatgcgctcgcgcccgagcgcttgcgcgacagtctcgagcgttacttc
gggcctgcgacgggcgaagtcgactggcagcgcgtcgcggcgatcgtcgcgttgacgggc
cgcgtgacgatcgtcagcggcggccccggcaccggcaagacgacgaccgtcgtcggcgtg
ctcgcttgtctgctcgacgcgcagccaagcttgcgcatcgcgctcgcggcgccgaccggc
aaggccgcgcagcggatgcaggaagcgctgcacgcacgggccggcgacttgccgccggag
ctcgccgcgcggctgcccgacacgtcgtatacgctgcatcgcctgctcggaggcggcggt
gcggccggtttccggcatcatcgcgacgatccgctgccgtacgacctgatcgtcgtcgac
gaggcgtcgatgatcgacgtcgcgctcgccgcgcatctgctcgacgcgctcgcgccgggc
gcgcggctcgtgctgctcggcgacaaggatcagcttgcggcggtcgaggccggtgccgta
ttcgcggaattgagcgcgcggccgacgtttaccgccgcggcgcgcacgcgtatcgcgcat
gcactcgggatcgacgaagcagcgttcgtcgcggcgctgcccgtgccggacgcacttgct
gccgtcgtgtcggaagcgggggcttcggtgcagaattgtgcgtctgcgtctgcgtctgcg
tctgcgtctgcgtctgcgtctgcatcggcatcgccatcgccatcggcatcggcatccgca
tccgcatccgcatccgcatccgcgccggccgctaccgcacgcaagtcgtcttcccggcgg
aagatcgacacacggcaggcgtcgcttttcgacgacgaaccttcggaacgacaggacgac
gcagccgcttcgcccggcgccgtatcgaaaccggcgtcggcatcggcatcggtcgccgac
gagcccgcgccggtcgacagcagcgatgccgatgtaccgcccgcgtggatcgaggccgac
gagctcgcgtggctcgatgccgtcgagctgccgccgttcgacgcgaccgacgtcgcaatc
ggggcgccggatgcgagcccgttgcagcacgacgaaacctccagcgcccacgatgcgcgt
acggcagcgcccgcaccgctcgcggactgcgtcgtatggctcgagcgcaattaccgtttc
ggtctcgactcgccgatcggccggctgtcgctcgcgatccgccgcggcgacgtgcaggcc
gcgctcgacgcgttgccggccgatgccgccgctgccgcgtcgttctacgacgacgcgggc
gacacgctcgcattggcgacggtcgagcggctcgcaagccggttcggcgcgtacctggac
gcgttgcacgacgcgcttgccgcgccggcgcccgatccgctgccgctgttcgatgcgctg
aaccggtttcgtattctgtgcgcaacgcgcagcggcgcgcgcggcgcggagcacgtgaat
gcgctcgtcgccgcgcacgtgcggcgcgcagcacgcttgccgcttgcggtcggcgcgcac
tggttcaccgggcggccggtgatggtcacgcgcaacgactatgcgctcgggctcttcaac
ggcgacatcggcatcgcgctgcccgatgcgcacggcgtgctgcgcgtgtggttcaggcgc
gcggacggcaccgcgcgcgcggtgtcgccggccgcgttgccgccgcatgaaacggcgttc
gcgctgacggttcacaaatcgcagggctccgaattcgacgaggccgcgctcgtgctgccg
gcgtcgttcggtcgcgtgctcacgcgcgaactcgtttatacggccgtcacgcgcgcgcgc
gtccgcgtgcaggcgatcggcgcgcgccgcgtgctcgcgcaggcggtcgcgacgcgcacg
caacgcgattccgggctcgcggcgcgcatcgacgaggcgctcgcgcggcgccgcgcggag
gtgccgcgatga
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