Burkholderia dolosa: AK34_2805
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Entry
AK34_2805 CDS
T03793
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bdl
Burkholderia dolosa
Pathway
bdl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AK34_2805 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdl03021
]
AK34_2805 (rpoC)
03400 DNA repair and recombination proteins [BR:
bdl03400
]
AK34_2805 (rpoC)
Enzymes [BR:
bdl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AK34_2805 (rpoC)
Transcription machinery [BR:
bdl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AK34_2805 (rpoC)
DNA repair and recombination proteins [BR:
bdl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AK34_2805 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AJY11984
LinkDB
All DBs
Position
1:complement(3002397..3006638)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEQLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLTFTGVSEVIRAYENK
EVELASRVNVRITEMVRNEDKSEGAPEFVPKITLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYEAGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFSPSMRYVTNAKGEQIVISRSGEALITDDIGRERERHKIPYGATLLQLDGAAIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDAKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEGKRPASYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEM
SDRERFDQIAAEEAFDFGTPSTPAEEPQHPAAE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagtttttgacgcgatc
aagatcggcctggcctcgcccgacaagatccgttcgtggtcgttcggtgaagtgaagaag
ccggagaccatcaactaccgtacgttcaagccggagcgcgatggtctgttctgcgcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgtcgcgag
cgcatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtat
ttcgaagcatacgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaggaggattactacaacaaggtcgaggaatacggcgacgagttccgtgccgagatg
ggcgcggaaggcgtgcgtgaactgctgcgcgcgatcaacatcgacgagcaggtcgaacag
ctgcgcaccgagctgaagaacacgggctcggaagcgaagatcaagaagtatgcgaagcgc
ctgaaggtcctcgaggcattccagcgctcgggcatcaagcccgagtggatgattctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctggatggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggtcgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggcccgacg
ctgaagctgcatcagtgcggtctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagcttgaggtgatgggcgtcgcgacgacgatcaaggcggcgaagaaggaa
gtcgagaaccagacgccggtcgtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgtgcgccgacgctgcaccgtctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgattcagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctgacgttcaccggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccgcaacgaggac
aagtcggaaggcgcgccggagttcgtgccgaagatcacgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggagatcctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcggctgatcaacacggcattccgcaagtgcggtctgcgc
gcgacggtggtgttcgccgaccagctgatgcagtcgggcttccgtctcgcgacgcgtgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggagacgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgtcagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggagccggtgaccgaccgcgacggcaacgaaacgcgc
caggagtcgttcaactcgatctacatgatggccgactcgggcgcccgcggttcggcggtg
cagattcgtcagctggccggtatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggtctgaacgtgctgcagtacttcatctcg
acccacggcgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtcacgcaggatctcgtcgtggtcgaggacgattgcggc
acgtcgaacggcgtcgcgatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcgctg
cgcgatcgtatcctcggccgcgtcgcggtcgcggacgtcgtgaatccggaaacgcaggaa
acgctgtacgaagcgggcacgctgctcgacgaaacggcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctcacctgcgaaacgcgttacggcctgtgc
gcgtcgtgctacggccgcgacctcggccgcggctcgctcgtgaacgtcggcgaagcagtc
ggcgtgatcgcggcacagtcgatcggcgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggcggtgcggcatcgcgtgcggcagtcgcgtcatcggtcgaagcgaagagcaac
ggtacggttcgcttctcgccgtcgatgcgctacgtgacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgctgatcaccgacgatatcggtcgcgagcgcgagcgt
cacaagatcccgtacggcgcgacgctgctgcagctcgacggcgccgcgatcaaggccggc
acgcagctggcgacgtgggatccgatgacgcgtccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacc
ggcctgtcgaccctcgtcgtgatcgacgcgaagcgtcgcggttcgcaggcatcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgaagaagtgaagatcccgggcacc
gagcattcggtgcagatcggcttccaggtcggcgcactgatcaccgtgaaggacggtcag
caggtgcaggtcggtgaagtgctcgcacgtattccgaccgaatcgcagaagacccgcgac
attaccggcggtctgccgcgagtggccgagctgttcgaagcgcgttcgccgaaggatgcg
ggcatcctcgcggaagtcaccggtacggtgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggacctcgagggcaaccagcacgagttcctgattgcgaaggaaaag
caggtgctggtccacgacggtcaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtg
gacgaagtgcaggacgtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgattgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttc
atcccgggcgaacaggttgagcgttcggacatgctggacgagaacgatcgcatgatcgcc
gaaggcaagcgtccggcgtcgtacgacaacgtgctgctcggtatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgacctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtacgggtctcgcgttccacaaggcgcgcaaggcgaaggagatg
tccgaccgcgagcgtttcgaccagatcgcagcggaagaggcattcgacttcggtacgccg
agcacgccggcggaagagccgcaacacccggcagccgagtaa
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integrated database retrieval system
