Burkholderia dolosa: AK34_4767
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Entry
AK34_4767 CDS
T03793
Name
(GenBank) tRNA-splicing ligase RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bdl
Burkholderia dolosa
Brite
KEGG Orthology (KO) [BR:
bdl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bdl03016
]
AK34_4767
Enzymes [BR:
bdl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AK34_4767
Transfer RNA biogenesis [BR:
bdl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AK34_4767
Prokaryotic type
tRNA splicing ligases
AK34_4767
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AJY09454
LinkDB
All DBs
Position
2:1852268..1853491
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AA seq
407 aa
AA seq
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MTETDYQLMELANGKPVKMWTHGVAVEEDARTQLRNTAQMPFIFRHVAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTASDLPDSLAGLRGAIERAVPHGRAPGRR
DPGAWGDRPPAAVSDTWQALLPGFRRIVDKYPKLEKTNHYAHLGTLGTGNHFIEVCIDEA
ERVWFMLHSGSRGVGNAIGSLFIELAQADMRRHVANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDYARRNRQVMMDAVIGAARDAIGKPFALDEHAVNCHHNYVQRERHFGEDVFVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTVDDQVKAT
QGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaccgactatcaactcatggaactggcgaacggcaagccggtgaagatgtgg
acgcacggcgtcgcggtcgaggaagacgcgcgcacgcaactgcgcaacaccgcgcagatg
ccgttcatcttccggcacgtcgcggtgatgcccgacgtccatctcggcaagggctcgacg
atcggcagcgtgattccgacgaaaggcgcgatcatcccggccgcggtcggcgtcgacatc
ggctgcggaatgatggccgcgcgcacgacgctcaccgcatcggacctgccggactcgctc
gcgggcctgcgcggcgcgatcgaacgcgcggtgccgcacggccgcgcgccgggccggcgc
gatccgggcgcgtggggcgaccgtccgccggcggccgtcagcgacacctggcaagcgctg
ctgccgggtttccggcggatcgtcgacaagtatccgaagctcgaaaagaccaatcattac
gcgcatctcggcacgctcggcaccggcaatcacttcatcgaagtgtgcatcgacgaagcc
gagcgcgtgtggttcatgctgcacagcggttcgcgcggcgtcggcaacgcgatcggcagc
ctgttcatcgagctcgcgcaggccgacatgcgccggcacgtcgcgaatctgccggaccgc
aatctcgcgtatttcaccgaaggcagccggcacttcgacgattacgtcgaagcggtcggc
tgggcgcaggactacgcgcgccgcaaccggcaggtgatgatggacgcggtgatcggcgcg
gcgcgcgacgcgatcggcaagccgttcgcgctcgacgaacacgcggtgaactgccaccac
aactacgtgcagcgcgaacgccacttcggcgaggacgtattcgtcacgcgcaagggcgcg
gtgtccgcacaaaagggacagctcgggatcattcccggctcgatgggcgcgaagagcttc
atcgtgcgcgggctcggcaacccggaaagcttctgttcgtgcagccacggcgcgggccgg
acgatgagccgcaccgaagcgaaacgccgcttcacggtcgacgatcaggtgaaggcgacg
cagggcgtcgaatgccggaaggacgccggtgtcgtcgacgagatcccgatggcgtacaag
gacatcgacgcggtgatggcggcccagcgcagcctcgtcgaagtcgtgcatacgctgcgc
caggtcgtgtgcgtgaagggctga
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