Brevundimonas diminuta: EQG53_00250
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Entry
EQG53_00250 CDS
T05851
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bdm
Brevundimonas diminuta
Pathway
bdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQG53_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdm03019
]
EQG53_00250
03009 Ribosome biogenesis [BR:
bdm03009
]
EQG53_00250
Enzymes [BR:
bdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EQG53_00250
Messenger RNA biogenesis [BR:
bdm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EQG53_00250
Ribosome biogenesis [BR:
bdm03009
]
Prokaryotic type
rRNA helicases
EQG53_00250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QAT12903
UniProt:
A0A410NSH2
LinkDB
All DBs
Position
complement(52722..54728)
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AA seq
668 aa
AA seq
DB search
MPFPAIHPALDRALLNKGYAEPTPVQAAVLEGHGEADLLVSAQTGSGKTVAFGLAAAPTL
LGEDERFGQPDTPLMLAIAPTRELALQVAAELEWLYAEAGAKIVTCVGGMDARKEARALN
YGAHVVVGTPGRLKDHIDRGALDLSAARVVVLDEADEMLDMGFREDLEYILDQAPEERRT
LLFSATIARDIAIMAKRYQKDAVRIDTVDRSQPHNDIEYRAMRIAPNEIERAVVNVLRYF
EAPGVLVFCSTRDSVRHLQAALVERGFASVSLSGEMGQRERNEALQALRDRRARVCVATD
VAARGLDLPDLGLVIHAELPINKATMLHRSGRTGRAGKKGISVLLVPHSRRRKAEMLLGS
AGVEAVWSGAPTADEIRAQDEQRLLAAPVFAEEGADEDAGLVEKLVKERTPDDLARALLV
LLRKNLPAPEDLTDPGEGPQRKPRKDRDAAGGDAYAPAPWPGDRLQPDEVSWFRLDIGRN
RNADPKWLIPLICRIGGITKQQIGSIRTFPEETRFEVALTHADAFRAAAAQSKEEARITP
SEAPTPGSMKGARNRNFERDGEARPYAKKPFRRDEDGQGRPPFKKKPWSPDGDAGRSADG
ERSFKKKPYAPRTDAAPGEGGFSKKPGFKDKGDKKPFTPKAGFKGKPDFKGGGKPFAKGP
KKAGKRFD
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgccctttcccgcgatccatcccgcgcttgaccgcgccctgctgaacaagggctatgcc
gagcccacgccggtccaggcggctgtgctggaaggccatggcgaggcggacctgctggtt
tcggcccagaccggatcgggcaagacggtggccttcggcctggcggcggcgccgaccctg
ctgggcgaggacgaacggttcggtcaaccggacacgccgctgatgctggccatcgccccg
acgcgtgaactggcgctgcaggtcgcggcggagctggagtggctgtacgccgaggcgggc
gccaagatcgtcacctgcgtcggcggcatggacgcccgcaaggaagcccgcgccctgaac
tacggcgcccacgtcgtggtcggcacgccgggccgtctgaaggaccacatcgaccgtggg
gcgctggatctgtcggccgcccgcgtcgtcgtgctggatgaagccgacgagatgctggac
atgggcttccgcgaggatctggaatacattctggaccaggcgccggaagagcgccgcacc
ctgctgttctcggccaccatcgcccgcgacatcgcgatcatggccaagcgctatcagaag
gacgcggtgcgtatcgacaccgtcgaccgcagccagccgcacaacgacatcgaataccgc
gccatgcggatcgcgccgaacgagatcgagcgcgccgtggtcaacgtcctgcgctatttc
gaagcgccgggggtgctggtcttttgctcgacgcgggattcggtgcgtcacctgcaggcg
gcgctggtcgagcgcggcttcgcctcggtgtcgctgtccggcgagatgggccagcgcgag
cgtaatgaggcgctgcaggcgctgcgcgatcgtcgcgcccgcgtctgcgtcgccaccgac
gtggccgcgcgcggtctggacctgcccgatctggggctggtgatccacgccgaactgccg
atcaacaaggcgaccatgctgcaccgctcgggccgcaccggacgggcgggcaagaagggg
atctcggtcctgctggtcccgcacagccgccgccgcaaggccgagatgctgctgggctcg
gccggggtcgaagccgtctggtcgggcgcaccgaccgccgatgaaatccgcgctcaggac
gaacagcgcctgctggccgcgcccgtcttcgccgaggaaggcgcggacgaggacgccggt
ctggtcgaaaagctggtcaaggagcgcacgccggacgatctggcccgcgccctgctggtg
ctgctgcgcaagaacttgcccgcgccggaagacctgaccgatccgggcgagggcccgcag
cgcaagccgcgcaaggatcgcgatgcggcgggcggcgacgcctacgcccccgcgccgtgg
ccgggcgaccggctgcagccggacgaagtcagctggttccgcctggacatcggccgcaac
cgcaacgccgatcccaagtggctgatcccgctgatctgccgcatcggcggcatcaccaag
cagcagatcggctcgatccgcaccttccccgaagagacgcgcttcgaggtcgccctgacc
cacgccgacgccttccgcgccgcggcggcccagagcaaggaagaggcccggatcaccccg
tccgaggcgccgacgccaggttcgatgaagggcgcgcgcaaccgcaatttcgagcgtgac
ggcgaggcccgcccctacgccaagaagcctttccgtcgcgacgaggacggccagggccgc
ccgccgttcaagaagaagccgtggagcccggacggcgacgcgggccgcagcgcggatggc
gagcgttccttcaagaagaagccctatgcgccgcgcaccgatgcggcgccgggcgagggc
ggcttcagcaagaagccgggcttcaaggataagggcgacaagaagcccttcacgcccaag
gcgggcttcaagggcaagccggacttcaagggcggcggcaagcccttcgccaaggggccg
aagaaggcgggcaagcgtttcgactga
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