Brevundimonas diminuta: EQG53_00285
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Entry
EQG53_00285 CDS
T05851
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bdm
Brevundimonas diminuta
Pathway
bdm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bdm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EQG53_00285 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdm03021
]
EQG53_00285 (rpoD)
Transcription machinery [BR:
bdm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EQG53_00285 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Com_YlbF
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QAT12910
UniProt:
A0A246KDT2
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Position
complement(57958..59880)
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AA seq
640 aa
AA seq
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MSAQTETQDAETNADGPLLDLTDAGVKKFIRQAKTRGYVTMEELNKVLPSEEVTPDQIED
ILAMLSEMGVNVVEAEEDAAEATGTDVAAAAETSVAEAPAKAAYDRTDDPVRMYLREMGT
VELLSREGEIAIAKRIEAGRDAMISGLCESALTFEAIMVWREELANNRILLREVIDLDAT
YGILNPSSLPHNQPAPAQPTGEPDGDGEEDDDEDFDDGGAMSISALEAELRDGVMEVLDA
IAVDFGEFRKLQDKLVEARLKGEVLTAKDQKTYEALTASISDRLKTMKLNNARIEALVEQ
LYAINKRLIGQEGRLLRLADGYGISRPEFLKAYFGSEMDPTWAERIKEMGVRWTKFSENE
AAQIDTIRTQIAAVATEAGVPIDDYRRIVQMVQKGEREARQAKKEMVEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP
VHMIETINKIVRTQRQMLHEIGREATPEELAERLAMPLEKVRKVLKIAKEPISLETPIGD
EEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTL
EEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcagaccgagacgcaggacgccgaaaccaacgccgacgggcccctgctcgat
ctcaccgacgccggggtgaagaaattcatccgccaggcgaagacgcgcggctatgtgacg
atggaggagctgaacaaggttctgccgtccgaagaagtcacgccggaccagatcgaagac
atcctggccatgctgtcggagatgggcgtcaacgtcgtcgaagccgaagaggacgccgct
gaggcgaccggcaccgacgtggccgccgccgccgagacctcggtcgccgaagcgcccgcc
aaggccgcctatgaccgcaccgacgacccggtgcggatgtatctgcgcgaaatgggcacg
gtcgagctgctgagccgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgt
gacgccatgatctcgggcctgtgcgaaagcgccctgaccttcgaggccatcatggtctgg
cgcgaggagctggccaacaaccgcatcctgctgcgcgaagtgatcgacctggacgccacc
tacggcatcctgaatccctcgtccctgccgcacaaccagcccgccccggcccagccgacc
ggcgagccggacggcgacggcgaagaggacgacgacgaggacttcgacgacggcggcgcc
atgtcgatctcggccctggaggccgaactgcgcgacggcgtcatggaggtgctggacgcc
atcgccgtcgacttcggcgagttccgcaagctgcaggacaagctggtcgaggcgcgcctg
aagggcgaagtcctgaccgccaaggaccagaagacctatgaggctctgacggcgtccatc
tcggaccgcctgaagacgatgaagctgaacaacgcccgcatcgaggcgctggtcgaacag
ctgtacgccatcaacaagcgcctgatcggccaggaaggccgcctgctgcgtctggccgac
ggctacggcatttcgcggcccgagttcctcaaggcctatttcggctcggagatggacccg
acctgggccgagcgcatcaaggagatgggcgtccgctggaccaagttcagcgagaatgaa
gccgcccagatcgacacgatccgcacccagatcgccgctgtcgccaccgaggcgggcgtg
ccgatcgacgactatcgccgcatcgtccagatggtgcagaagggcgagcgcgaggcccgt
caggccaagaaggaaatggtcgaggccaacctgcgcctcgtgatctccatcgccaagaaa
tacaccaaccgcggcctgcagttcctggacctgatccaggaaggcaacatcggcctgatg
aaagcggtcgacaagttcgagtaccgccgcggctacaagttctcgacctacgccacctgg
tggatccgtcaggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgcatcccg
gtgcacatgatcgagacgatcaacaagatcgtccgcacccagcgccagatgctgcacgag
atcggccgcgaggcgaccccggaagagctggccgaacgcctggccatgccgctggagaag
gtccgcaaggtgctgaagatcgccaaggagccgatctcgctggaaaccccgatcggcgac
gaggaagacagccacctgggcgacttcatcgaggacaagaacgccgtcctgccgatcgac
gccgccatccagtcgaacctgcgcgagacgacgacccgcgtgctggcctcgctgaccccg
cgcgaggagcgtgtcctgcggatgcgcttcggcatcggcatgaacaccgaccacactctg
gaagaggtcggccagcagttctcggtcacgcgcgaacgcatccgtcagatcgaggccaag
gccctgcgcaagctgaagcacccctcgcggtcgcggaagctgcggagcttcctggacagc
tga
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