Brevundimonas diminuta: EQG53_12915
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Entry
EQG53_12915 CDS
T05851
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdm
Brevundimonas diminuta
Pathway
bdm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EQG53_12915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdm03400
]
EQG53_12915 (mfd)
Enzymes [BR:
bdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EQG53_12915 (mfd)
DNA repair and recombination proteins [BR:
bdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EQG53_12915 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QAT15178
UniProt:
A0A410NZ42
LinkDB
All DBs
Position
complement(2612850..2616299)
Genome browser
AA seq
1149 aa
AA seq
DB search
MDVALARTDAELGGAPEGLDALIVAERIKAQGGTALFIARDYQRTGNFIQAFRFFAKDIE
VLEYPSWDCLPYDRLSPTASVAAQRMATLTRLATRDPADRTPLLVVATVAAAAQRTPPRS
AVTGAGFAAKVGADLDTAALERYVAANGYVRASTVSERGEYAIRGGVIDVFPPGFEEPVR
LDMFGSELESIRAFDPETQRSTRQLKAVSLSPVSEVLMDADSISRFRSGYLNLFGAPGDE
PMYAAVSEGARRQGVEHWLPLFYDRLDTLFDYLPDAAPVFLDSQTEQARAERWNLTVDAY
EARKEAARGKGGAAYRALPPARLYLDDGDWNSALAGRAVRRLSPLVAGSGEDAGGRLGRS
FAAERSQDSVNLFAAVAQHAEALKGQGKRVLFASWSEGSAERLAAMLGDHGLTHVVAVRD
WDDVRGAPDGIYLRAVLPVEHGFATDDLAVISETDILGDRLARPKRKRRASNFLAEASAL
TAGDLVVHLDHGIGRYEGLRTLEIQEAPHDCLELLYAGESKLYLPVENIDLLTRYGTDAE
GVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRVSDAITPPAGLFDEFCARFP
YEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPT
TLLARQHFKTFSERFAGWPIKVRHLSRMVTAKDANETRAGLKDGSFEIVVGTHAVLADQV
GFKDLGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIAT
PPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPDIERFLREQVPEVKF
VVGHGQMSPTQLEAVMSAFYDGEYDVLVSTTIVESGIDIPTANTLVVHRADMFGLAQLHQ
IRGRIGRSKARAFAYLTTDPTKPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL
LGDEQSGHIREVGVELYQQMLEDAVAELREQGEAAPDRGWSPSINVGAAVLIPEDYVPDL
NVRLSLYRRLSDAEKMEDREAMAAELIDRFGPLPDEAQQLLRIVGIKANCRTAMIEKIDI
GPKGAVLTLRNNTFPNPMGLVGLIQKNHAFWKIRPDQKIVVKGDWPTPEDRLKVAERITA
DLARVAGAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggcgctggcgcggactgacgcagaactgggcggcgcgccggaagggctggac
gccctgatcgtcgccgagcggatcaaggcccagggcgggaccgctttgtttatcgcgcgc
gattatcagcgcacaggcaatttcatccaggcgttccgtttcttcgccaaggatattgaa
gttcttgaatatccttcgtgggattgcctgccttacgaccgactgagcccgacggcctcg
gtcgccgcccagcgcatggcgacgctgacccggttggcgacccgcgatccggcggaccga
acgccgctgctggtggtcgccacggtcgcggccgccgcccagcgcacgccgccgcgcagc
gccgtgaccggcgccggtttcgcggccaaggtcggcgccgatctcgatacggccgctctc
gagcgctacgttgcggccaacggctatgtacgcgcctccaccgtgtcggagcgcggcgaa
tacgccattcgcggcggggtgatcgatgtcttcccgccgggattcgaggagccggtgcgc
ctcgacatgttcgggtctgagctggaatcgatccgcgccttcgaccccgagacccagcgt
tcgacgcgccagttgaaggccgtctctctatcgcccgtgtccgaagtgctgatggatgca
gattcgatctcgcgcttccgcagcgggtatctgaacctgttcggcgcgccgggcgatgag
ccgatgtacgccgccgtcagcgagggcgcgcgccgtcagggcgtcgagcactggctgccg
ctgttctacgaccggctggatacgctgttcgactatctgccggatgcggcgccggtcttt
ctcgacagccagacggagcaggcgcgtgcggagcgctggaacctgaccgtcgacgcctat
gaggcgcgcaaggaggcggcgcgcggcaagggcggggcggcctatcgcgccctgccgccc
gcgcggctctatctggatgacggcgactggaacagcgccctggccggtcgcgccgtgcgc
cggctgtcgcctctggtcgctggttcgggcgaagacgcgggcggccgtctgggccgcagc
ttcgccgccgagcggtcgcaggacagcgtcaatctgttcgccgctgtcgctcagcatgcc
gaggcgctgaaggggcagggcaagcgcgtgctgttcgcatcatggtccgaaggctcggcc
gaacgtctagccgccatgctgggcgatcacggtctgacgcacgtcgtggcggtgcgcgat
tgggacgatgtgcgcggcgcgccggacggcatctatctgcgggcggtgttgccggtcgag
cacggcttcgccaccgacgatctggccgtcatctccgagaccgacattctgggcgaccgt
ttggcgcggcccaagcgcaagcggcgggcgtcgaacttcctggcggaggcctcggccctg
acggcgggcgatctggtcgtccacctggatcacggcatcggccgctacgagggcctgcgg
acgctggagatccaggaggcgcctcacgactgcctcgaactcctctatgcgggtgagagc
aagctctacctgccggttgagaacattgaccttctgacccgctacggcacggacgccgaa
ggggttcaactggaccgtttgggcggcgcgggctggcaggcgcgcaaggccaaggccaaa
gagcgcctgcgcgccatggccgaggggctgatcgccctggccgccaagcgggcgctgcgc
gtgtccgacgccatcacgccgcccgccggcctgttcgacgagttctgcgcccgcttcccg
tatgaggagacggacgaccagttgaacgccatcggcgacgtgctggaagatctgggcaag
ggcacgccgatggatcgtctgatctgcggcgacgtcggcttcggcaagacggaggtcgcc
ctgcgcgccgccttcgttgtggcgatgactggccaacaggtcgccattgtctgcccgacg
accctgctggcgcgtcagcacttcaagaccttctcagagcgcttcgccggctggccgatc
aaggtgcgccacctgtcgcgcatggtcacggccaaggacgccaacgagacgcgcgcgggg
ctgaaggacggcagtttcgagatcgtcgtcggcacccacgcggttctggccgatcaggtc
ggtttcaaggatctgggcctcgtcatcgtcgacgaggagcagcacttcggcgtcaagcac
aaggagaagctgaagtccctgcgggccgatgttcacctgctgaccctgacagccacgccg
atcccgcggacgctgcagatggcgctgtccggcatccgcgagatgtcgatcatcgccacg
ccgccggtcgatcgtctggcggtgcggacctatgtcacgccgtgggatccggtgctggtg
cgcgaggccctgctgcgcgagaaatatcgcggcggtcaggcctattacgttgcgccgcgc
ctgaaggatctgcccgacatcgagcggttcctgcgcgaacaggtgcccgaggtgaagttc
gtcgtcggtcacggccagatgagcccgacccagttggaagcggtcatgagcgccttctat
gatggcgaatatgacgtgctggtctcgaccaccatcgtcgagagcggcatcgacattccg
accgccaacacgcttgtcgtgcatcgcgcggacatgttcggactggcccagcttcaccag
atcaggggccggatcggccggtccaaggcgcgggccttcgcctatctgacgaccgatccg
actaagcctctgagcctgtcggcggaacgccgtctgcaggtgctgcagtcgctggataat
ctgggcgccggcttccagttggcgagccacgatctggaccagcgcggcggcggcaacctg
ctgggcgacgaacagtcgggccacatccgcgaggtcggcgtcgaactgtatcagcagatg
ctggaagacgccgtcgccgaactgcgcgagcagggcgaagcggcgccggatcgcggctgg
tcgccttcgatcaatgtcggcgcggccgtattgattccagaggattacgtccctgacctg
aacgtccgcttgagcctgtatcgccgcctgtcggacgccgagaagatggaggaccgcgag
gccatggccgccgagctgatcgaccggttcggccccctgccggacgaggcgcagcagctt
ctgcggatcgtggggatcaaggccaactgccgcacggccatgatcgaaaagatcgacatc
gggcctaagggcgcagtgctgactctgcgaaacaacaccttccccaacccgatggggctg
gtgggcctgatccagaagaatcacgccttctggaagatccggccggatcagaagatcgtg
gtgaagggcgattggcccacgccggaggatcgactgaaggtcgccgagcgaatcaccgcc
gacctggcgcgggtggcgggggcggcctag
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