Brevundimonas diminuta: EQG53_14920
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Entry
EQG53_14920 CDS
T05851
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bdm
Brevundimonas diminuta
Pathway
bdm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EQG53_14920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdm03021
]
EQG53_14920 (rpoC)
03400 DNA repair and recombination proteins [BR:
bdm03400
]
EQG53_14920 (rpoC)
Enzymes [BR:
bdm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EQG53_14920 (rpoC)
Transcription machinery [BR:
bdm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EQG53_14920 (rpoC)
DNA repair and recombination proteins [BR:
bdm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EQG53_14920 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
YnfE
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QAT15528
LinkDB
All DBs
Position
complement(3010683..3014876)
Genome browser
AA seq
1397 aa
AA seq
DB search
MNQEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYHYQEEFGDDGFTA
EIGAEAVRNLLMAIDLNAEAEKHRAELADNPSELKAKKASKRLKLLEAFIESGNKPEWMI
LTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKENQPGEGKLFANMGEIDAALD
AQVVKLHTKIKARWTEMNSDGEVVTKVIDTTPGRMKLGALLPLNPNIGYKLLEKNLTKKE
IGNLIDQVYRHCGQKATVIFADQMMQMGFREAAKAGISVGKDDIVIPAKKEQLVNETRTQ
VEEYEQQYADGLITKGEKYNKVVDAWAKATDKIADEMMGEIAQPRVLIKGQEPDINSVFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEEDCGSTRGITLRAVVEGGDVLVSLGQRVLGRYA
AEDIKEPGGEVLFPADTYLQEEEVELIDKVGVQSIKVRSALTCEADAGICGMCYGRDLAR
GTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFFEATNAGVIKVVGPTVI
AAHGDPVAMSRNVVVTVTVDGKDRESYKVPYGARLRVKDGGEVVKNQRLAEWDPYTTPIL
TEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGADLRPAMGVTQGDSYAKL
SSGSDARYLLPVGAILSVANGDEVKPGDIIARIPTEGAKTRDITGGLPRVAELFEARRPK
DCAVIAEMDGRVEFGRDYKNKRRIKITPEPDADGNQAEAVEFLIPKGKHISVHDGDLIQK
GDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVEV
IDSAETTLIKGDHVDRVEVDIENAKVEKRGGRIATVQPVLLGITKASLQTRSFISAASFQ
ETTRVLTEASVHGKKDTLEGLKENVIVGRLIPAGTGSYLRSLQKIANERDAELTQAREDA
VEPLPADLALELEQSAD
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaacccggtcccggtcaccccgaccttcgaccag
atcaagatcgccctggcctcgccggagaagatccgttcgtggtcgttcggcgagatcaag
aagccggaaaccatcaattaccgcacgttcaagcccgagcgtgacggcctgttctgcgcc
cgtatctttggcccgaccaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgttgaagtcaccctggctcgcgttcgccgc
gagcgcatgggtcacatcgacctggccgctccggtcgcccacatctggttcctgaagtcg
ctgccgtcgcgcatctcgctgatgctggacatggcgctgaaggacgtcgagcgcgtcctg
tacttcgagaactacatcgtcaccgagccgggcctgaccccgctgaagcagaaccagctg
ctgacggaagacgaattctatcactatcaggaagagttcggcgacgacggcttcacggcc
gagatcggcgccgaggcggtccgcaacctgctgatggcgatcgacctgaacgccgaggcc
gagaagcaccgcgccgaactggccgacaacccgtcggagctgaaggccaagaaggcgtcc
aagcgactgaagctgctggaagccttcatcgagtcgggcaacaagcccgagtggatgatc
ctgaccatcgtcccggtcatcccgccggaactgcgtccgctggtgccgctggacggcggc
cgcttcgcgacgtcggacctgaacgacctgtatcgccgggtcatcaaccggaacaaccgc
ctgaagcgcctgatcgagctgcgcgcgccggacatcatcatccgcaacgaaaagcggatg
ctgcaggaatccgtcgacgccctgttcgacaacggccgtcgcggtcgcgtcatcaccggc
gcgaacaagcgtccgctgaagtcgctggccgacatgctgaagggcaagcagggtcgcttc
cgtcagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcaccgtgggc
cccgagctgaagctgcatgagtgcggcctgcccaagaagatggccctggagctgttcaag
ccgttcatctacgcgcgtctggacgccaagggcctgtcgggcaccgtcaagcagtccaag
cgcatggtcgagcgcgagcagcccgccgtctgggatatcctggacgaggtcatccgcgag
cacccggttctgctgaaccgcgcgccgacgcttcaccgtctgggcatccaggcgttcgag
cccaagctgatcgagggcaaggccatccgcctgcacccgctggtctgtacggcgttcaac
gctgacttcgacggcgaccagatggccgtgcacgtcccgctgagccttgaggcccagctg
gaagcgcgcgtgctgatgatgtcgacgaacaacatcctgtcgcccgccaacggcaagccg
atcatcgtgccttcgcaggacatcgtcctgggcctgtactacctgtcgctggtcaaggag
aaccagccgggcgagggcaagctgttcgccaacatgggcgagatcgacgcggcgctggac
gcccaggtcgtcaagctgcacaccaagatcaaggcgcgctggaccgagatgaactcagac
ggcgaagtcgtgaccaaggtgattgacaccacgccgggccggatgaagctgggcgctctg
ctgccgctgaacccgaacatcggctacaagcttcttgagaagaacctgaccaagaaggaa
atcggcaacctgatcgatcaggtctaccgtcactgcggtcagaaggcgacggtcatcttc
gccgaccagatgatgcagatgggcttccgtgaagcggccaaggccggcatctcggtgggc
aaggacgacatcgtcatcccggccaagaaggaacagctggtcaacgaaacccgcacccag
gtggaagagtacgagcagcaatatgctgacggcctgatcaccaagggcgagaagtacaac
aaggtcgtcgacgcctgggccaaggccacggacaagatcgccgatgagatgatgggcgaa
atcgctcagccgcgcgtcctgatcaagggtcaggagccggacatcaactcggtcttcatg
atggccaactcgggcgctcgtggctcgcaggctcagatgaagcaactaggcggcatgcgc
ggcctgatggccaagccctcgggcgaaatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgagtacttcaactccacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgccaactcgggttacctgacccgccgtctggtggacgtggcg
caggactccatcgtcaccgaggaagactgcggctcgacgcgcggcatcaccctgcgcgcc
gtggtcgaaggcggcgacgtgctcgtctcgctgggccagcgcgtcctgggccgttacgcg
gccgaggacatcaaggagccgggcggcgaagtcctgttccctgcggacacctatctgcag
gaagaggaagtcgagctgatcgacaaggtcggcgtccagtccatcaaggtccgttcggcc
ctgacgtgtgaagccgacgccggcatctgcggcatgtgctacggccgtgacctggcgcgc
ggcaccaacgtcaacatcggcgaagcggtcggcgtcatcgccgcccagtcgatcggcgag
ccgggcacccagctgacgatgcgtaccttccacatcggcggtacggctcaggtggcggaa
acctcgttcttcgaggcgaccaacgcgggcgtcatcaaggtcgtcggcccgaccgttatc
gccgctcacggcgatccggtggccatgagccgcaacgtcgtggtcaccgtgaccgtcgac
ggcaaggaccgcgaatcctacaaggtgccgtacggcgcgcgcctgcgcgtcaaggacggc
ggcgaggtggttaagaaccaacgcctggccgagtgggatccgtacaccaccccgatcctg
acggaagtcggcggcgtggtgcgcttcgaggatctggtcgagggcctgtcggtcaaggaa
gagacggacgaggccacgggcatcgcccaacgcgtcgtctccgactggcgcgccagcccg
cgcggcgcggacctgcgtccggccatgggcgtcacccagggcgacagctacgccaagctg
tcgagcggttctgacgcgcgttatctgctgcccgtgggggccatcctgtcggtggccaac
ggcgacgaggtcaagccgggcgacatcatcgcccgtatcccgaccgaaggcgccaagacc
cgcgacatcaccggcggtctgccgcgcgtggccgaactgttcgaagcccgtcgtccgaag
gactgcgcggtcatcgccgaaatggacggccgcgtcgaattcggtcgcgactacaagaac
aagcgccgcatcaagatcaccccggagccggatgccgacggcaaccaggccgaggcggtc
gagttcttgatcccgaagggcaagcacatctccgtccacgacggcgatctgatccagaag
ggcgactacatcatcgacggcaacccggatccgcacgacctgctgcgcattcagggcgtc
gaggcgctggccgagtatctggtgaacgaagtgcaggaggtctaccgactgcagggcgtg
ccgatcaacgacaagcacatcgaagtcatcgtccgtcagatgctgcagaaggtcgaggtc
atcgactccgccgagacgacgctcatcaagggcgaccacgtcgatcgggtcgaagtcgac
atcgagaacgccaaggtcgagaagcgcggcggccgcatcgccaccgtgcagccggtcctg
ctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcctcgttccag
gagaccacccgcgtcctcaccgaggcttcggtccacggcaagaaggacacgctggaaggc
ctgaaggaaaacgtgatcgtgggtcgcctgatcccggcgggcacgggctcctacctgcgc
agcctgcagaagatcgccaacgagcgtgacgctgagctgacccaggcccgcgaagacgcg
gtcgagccgcttcccgcggacctggccctggagttggagcagtcggccgactga
DBGET
integrated database retrieval system
