Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0328
Help
Entry
BBDE_0328 CDS
T04222
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBDE_0328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdn03019
]
BBDE_0328
03009 Ribosome biogenesis [BR:
bdn03009
]
BBDE_0328
Enzymes [BR:
bdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBDE_0328
Messenger RNA biogenesis [BR:
bdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBDE_0328
Ribosome biogenesis [BR:
bdn03009
]
Prokaryotic type
rRNA processing factors
BBDE_0328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BAQ26322
LinkDB
All DBs
Position
422926..425676
Genome browser
AA seq
916 aa
AA seq
DB search
MPSNTSEGFDEIEAVVSANADSTVPAPRRRRGGRRVVRGVGAAGASLELKVEEHAPAPLF
EEPKLPTSKPESEDAESRDEAEPVRPVRRRRRAADAEDEVESRPVRRRRADDDDERDDYE
APRRRAVDDDDDRPARRTRGRRRASADVEFRDSRDEHGEESTDERALDAVEMLPEGHVQR
RGSRPMTSLLFQEPVLPAVPAPREDADRDDSHDADGSVDVQEERSSRRRRRRSRDAEQDE
QSRRDEDDRNDRNDASGDDEEGSSHRSRRSRRLNAQERRAAAEVEQIEEDLVLDDITYAP
IDDESRSGKDDDDEGEAPTRTRRRRRSRGNHEDADEQQGADEQSGNRRRVRDEDDDEDGA
VTRRRRRRRGGAKSEDAEEPLVRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQ
SQLMEQDFLARREHVDRLMVVRERERHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRV
QNVLPSMEAAFVDIGQARNGVLYAGEVNWDSARLEGQPRRIELAFKSGDPVLVQVTKDPI
GHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTA
AEGASEEAITKDLESLVRQWERISAKRDEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFGK
MIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYL
PSGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVM
IDFVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEEC
PTCKGRGFILHDEPTVSADYDDPYALKGGDPFVKTNKHGHGTDVQVPKGSSPDVKAKLAQ
IAAAAVAANNAEPDEE
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagtaataccagtgagggcttcgatgagatcgaagccgtagtgtcagcaaatgca
gattccaccgttccggctccgcgtcgccgtcgtggcggccgtcgtgtggtgcgtggcgtc
ggagctgcgggtgcctcccttgaactcaaggtcgaggagcatgccccggccccgttgttc
gaggagccgaagctgccgacatccaagccggagtccgaggatgcggagtctcgggacgag
gccgagccggtgcgtccggttcgccgtcgccgtcgtgccgcggatgccgaggatgaggtc
gaatcccgtccggttcgccgtcgtcgcgcggatgatgacgatgaacgtgatgattatgag
gctccgcgtcgtcgtgccgtggatgacgatgacgaccgtccggcccgtcgtacgcgtggc
cgtcgtcgtgcctccgccgacgtggaattccgcgactcgcgtgacgagcatggcgaggaa
tcgactgacgaacgtgcgctggatgccgttgagatgttgccggaggggcatgtgcagcgt
cgcggttcgcgtccgatgacgtcgttgctgttccaggagccggtgctgcccgccgttccc
gcgccccgtgaggatgccgatcgggatgattcgcacgatgcagatgggtccgtggacgtt
caggaggagcgttcgtcgcgtcgccgtcgccgtcgctcccgtgatgccgagcaggatgag
cagagccgtcgtgacgaggacgatcgcaatgatcgcaatgatgcttcgggagacgatgag
gagggatcgtcccatcgttcccgccgttcgcgccgactgaatgcgcaggaacgtcgtgcc
gcggcggaagtcgaacagatcgaagaggatctggtgctggatgacatcacctacgctccc
atcgatgacgaatcgcgcagcggcaaggacgacgatgacgagggcgaggcgccgacgcgt
actcgtcgccgtcgccgttcgcgcggcaatcatgaggatgccgacgaacagcagggtgcg
gatgagcagtcgggcaaccgtcgccgtgtccgtgatgaagatgacgacgaggatggcgcc
gtcacccgtcgccgtcgccgtcgccgtggcggggcgaagtccgaggacgccgaggagccg
ctggtccgccgttcccgcaagcagcagtacatcgatgagatcaccgatgtggagggttcc
acgcgccttgaggccaagaagcagcgtcgtcgcgacaaccgtcgtgaacgtagccgtcag
agccagctcatggaacaggatttcctggcgcgccgcgagcatgtggaccgtctgatggtg
gtgcgtgagcgtgagcgccatacgcagatttccgtgattgaggacaacgtgctggtggag
cattacgtttccgacatccaggaggttgcgaccgtcggcaacatctatctcggccgcgtg
cagaacgtgctgccgagcatggaggccgcgttcgtcgacatcggccaggcgcgcaacggc
gtgttgtatgccggtgaggtgaactgggattccgcccgtctggagggccagccgcgccgt
atcgagctcgcgttcaagtcgggggacccggtgctggtgcaggttaccaaggatccgatc
gggcataagggcgcgcgcctgacctcacaggtcacgttggccggccgtttcctggtgctt
gtgccgtccggcggcatgaccggcgtgagccgtaagctcagcgagcgtgaacgttcccgt
ctcaagggcattgtctcgaagatcgccccgaaggatatgggcgtgatcatccgtaccgcc
gccgagggtgcctccgaggaggccatcaccaaggatctggaaagcctggtccgccagtgg
gagcgtatcagtgccaagcgtgacgagttcctgcatggcaagcgtccgaagctgctgcag
ggtgaaccggacgtggccattcgcgtggtgcgagacatcttcaacgacgatttcggcaag
atgatcgtcgagggcgaacgtgtgtacggccgtatcgaggagtatctcgacaccatggct
cccgatctgaaggataagctcgagaagtgggatccggccgagcatgagggcaaggatgtg
ttcgacaagtggcagatcgactcccagcttcgcaagggcatggaacgtcaggtctatctg
ccgtcgggcggttcgatcgtgatcgaccgtaccgaggccatgaccaccatcgacgtgaac
acgggtcgcttcatcggccgcggcaagagcctcgaggagacggttacgcgctgcaacctc
gaagcctccgaagagattgcgcgccagctacgtctgcgtgacatcggcggcatggtgatg
atcgatttcgtcgatatggtcatgccggccaaccgcgatctggtgttgcgccgactggtc
gaatgcctggcccgcgaccgtaccaagcatcaggtggccgaagtcacttcgctcggtctg
gtgcagatgacccgaaagcgtatcggccagggtctggtcgaggcgttctccgaggaatgc
ccgacctgcaagggccgtggcttcatccttcacgatgagccgaccgtgtccgccgactat
gacgacccgtacgccttgaagggcggcgatccgttcgtcaagacgaacaagcacggtcat
ggaacggacgtacaggtgccgaagggctcctcgccggacgtgaaggccaagctcgcgcag
atcgcagcggccgccgtggccgcgaataatgcggaaccggacgaagaataa
DBGET
integrated database retrieval system
