Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0349
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Entry
BBDE_0349 CDS
T04222
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBDE_0349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdn03019
]
BBDE_0349
03016 Transfer RNA biogenesis [BR:
bdn03016
]
BBDE_0349
Enzymes [BR:
bdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BBDE_0349
Messenger RNA biogenesis [BR:
bdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBDE_0349
Transfer RNA biogenesis [BR:
bdn03016
]
Prokaryotic type
tRNA degradation factors
BBDE_0349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
DUF1773
KH_5
S1_2
Ribonucleas_3_2
Motif
Other DBs
NCBI-ProteinID:
BAQ26343
LinkDB
All DBs
Position
455687..458329
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AA seq
880 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQAELKKIAAKETKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEI
KEGVKATLAEEFTDMDDAEKDKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILASALQQAKEARTTILEVINECIDGPAEMSPFAPRIITTTVPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVFISSEGGEGAEKAKEIIDSIANPHVPESGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVD
DRGKISLAIPGFEDQESSAPRREHGDRSDRDDRRGGRGRRDDRRSDRDDRDYDDRPRRRR
SDRDDRDYDDRPRRRRERDYDDRDDRDYDDRPRRRRSDRDDRDYDRDDRRSDRRGGRGRR
DDRNPRYAADENYDEYRADREERSERPRRRIRRDFDPFED
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgtagaagccgttatcgataatggttcattcggcaag
cgcacgctgcgcttcgagaccggtcgtctcgcccagcaggcggatggtgccgtcgccgcc
tatcttgatgatgattcgatgattctgtcgaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtcgacgtggaagagaagatgtatgccgccggcaaa
atcccgggctcgttcttccgccgtgagggccgcccgagctccgaggccattctcgcctgc
cgtatcatcgaccgtccgctgcgtccgttgttcccgcacaccctgcgcaatgaggtgcag
gtcgtcgaaaccgtactcgccgtcaatccggatgatgcctatgacgtcatcgcactgaac
gcggcttccgcctccaccatgatttccggtctgccgttcgaaggcccggtctccggtgtg
cgtctggctctgatcgacggccagtgggtcgccttcccgcgttggagcgagcgtgagcgc
gccgtgttcgaaatcgtggtcgccggccgcgtcgtcgagaacggtgacgtcgccatcgcc
atgatcgaagccggtgccggcaagaacgcctggcacctcatctacgacgaaggccagacc
aagccggacgaggaagtcgtcgccggtggtctcgaagccgccaagccgttcatcaaggtg
atctgcgaggcccaggccgagctcaagaagatcgccgcgaaggaaaccaaggaattccag
ctcttcccggagtacaccgaggacctgtacaaccgtatcgacgagatcgcgcacgccgat
ctcgatgaggctctgtccatcgccgagaagctgccgcgtcaggatcgcatccacgagatc
aaggaaggcgtcaaggccaccctcgcggaagagttcaccgacatggacgacgccgagaag
gacaaggagatcggcaacgccttcaaggagctgcagcgccagatcgtgcgccgtcgtatc
ctgacccaggattaccgcatcgacggccgtggcctgcgtgacatccgcaccctgtccgcc
gaggtggacatcgtgccgcgcgtgcacggttccgccctgttccagcgtggcgagacccag
attctgggcgtctccaccctgaacatgctcaagatggagcagcagatcgacgcactgtcc
ggtccgcagtccaagcgttacatgcacaactatgagatgccgccgtattccaccggcgag
accggtcgcgtcggttctccgaagcgccgtgagatcggccatggcgccctcgccgagaag
gctctcgtgccggtgctgccgagccgcgaggagttcccgtacgccatccgtcaggtctcc
gaggccatcggttccaacggttccacctccatgggttccgtgtgcgcctccacgctgtcc
ctgctcgccgcaggcgttccgctgaaggctccggtcgcgggcatcgccatgggcctggtg
tccggtgacgtcgacggccagcacatcttcaagaccctgaccgatatcctcggtgccgaa
gatgccttcggcgacatggacttcaaggtcgccggcacctctgaattcatcaccgccctg
cagctcgacaccaagctcgacggcattccggccgacattctggcctctgccttgcagcag
gccaaggaagcccgcaccaccatcctcgaggtcatcaacgagtgcatcgacggcccggcc
gagatgagcccgttcgcgccgcgcatcatcaccaccaccgttccggtcgacaagatcggc
gaggtcatcggcccgaagggcaagatgatcaatcagatccaggaagagaccggcgccgag
atcgccatcgaggatgacggtaccgtgttcatctcttccgagggcggcgagggtgccgaa
aaggccaaggagatcatcgactccatcgctaacccgcacgtgccggaatccggcgagacc
tacaacggcaaggttgtgaagaccacctccttcggtgccttcgtgaacctgaccccgggt
accgatggcctgctgcacatctcccagatccgcaacctggccaacggcgagcgtatcgac
gccgtcgaagacgtgctcaaggaaggcgacaccgttgaggtgatcgtgcagggcgtcgac
gaccgtggcaagatcagcctcgccatcccgggcttcgaggatcaggaatcctccgcacct
cgccgcgagcatggcgaccgttccgatcgtgatgaccgtcgtggcggccgtggccgtcgt
gacgatcgccgttccgatcgtgacgaccgtgactacgatgatcgtccgcgtcgtcgtcgt
tccgatcgtgacgaccgtgattatgatgatcgtccgcgtcgtcgtcgcgaacgtgactat
gacgatcgtgacgaccgtgactacgatgatcgtccgcgtcgtcgtcgttccgatcgtgac
gatcgcgactacgatcgtgatgaccgtcgttccgaccgtcgcggtggtcgtggccgccgt
gatgaccgcaatccgcgttacgccgccgacgagaactacgacgagtaccgcgccgatcgc
gaagagcgttccgaacgcccgcgtcgccgcattcgtcgcgacttcgatcccttcgaggac
tga
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