Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0438
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Entry
BBDE_0438 CDS
T04222
Name
(GenBank) tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bdn03016
]
BBDE_0438
Enzymes [BR:
bdn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
BBDE_0438
Transfer RNA biogenesis [BR:
bdn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BBDE_0438
Prokaryotic type
BBDE_0438
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
BAQ26432
LinkDB
All DBs
Position
542989..543879
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AA seq
296 aa
AA seq
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MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ
VCHLDISETILARCVGHMNVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARFSALERT
YVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPGGTTIRE
VKTAYWRRIPQRPLVDGEMTMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCVQVG
IGKRSLDWFADKMATPLREGSTGPIAPQGLTLEHIEYPDDDQLAIRAETIRAKRTL
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
ttggcatacgatggtggcggcttcttcggttgggcgaagcagcctgatcggcgtaccgtg
cagggggagatcgagcgcatactgcacaccgtgttgcgcgtgcccgtcgatgatgcgggg
gaacctctccgtctgaccgttgcgggacgtaccgataccggtgtgcacgcctcgcatcag
gtatgccatctggacatctctgaaaccatactcgcccgttgcgttgggcacatgaatgtg
ccgccagtggttgcgttgacgcgccggttgcagcgtatgctgccgaacgacatcacgatt
catgggatcaacgaggctccccaaggctttgatgcccgtttttccgcgctggaacgcacc
tacgtataccgcattgccgatcggagcagcgaaattgatccgaggatgcgcggtttcgtc
ctgcacgtcgacgacgatctggatctggaaaccatgaaccaggccgcggccatgaccatc
ggcctgcatgacttcggttcgttcgccacgccaaaccccggcggcaccaccatacgtgag
gtcaaaaccgcctactggaggcgcataccgcaacgtccgctcgttgacggcgagatgaca
atgggggagcgttaccgtacgccgtcaatggaatccggtctcgcctgcttcaccatcgtg
gccgacgcattcgcccgcaacatggtgcgatcgctggtcaacggctgcgtacaggtcggc
atcggcaaacgatccctcgattggtttgcggacaagatggccacaccgctgcgcgaaggc
tcgacgggaccgatcgcaccgcaggggctgacattggagcatatcgaatatcccgatgac
gatcagttggcgattcgtgccgaaacgattcgcgcgaaacgtaccttatga
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