Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0601
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Entry
BBDE_0601 CDS
T04222
Name
(GenBank) putative helicase
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdn03032
]
BBDE_0601
03029 Mitochondrial biogenesis [BR:
bdn03029
]
BBDE_0601
Enzymes [BR:
bdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BBDE_0601
DNA replication proteins [BR:
bdn03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
BBDE_0601
Mitochondrial biogenesis [BR:
bdn03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
BBDE_0601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
AAA_30
AAA_19
AAA_22
Viral_helicase1
Pif1_2B_dom
AAA_16
NTPase_1
SH3_13
Herpes_Helicase
nSTAND3
TrwB_AAD_bind
SLFN-g3_helicase
AAA
IstB_IS21
MeaB
AAA_5
AAA_14
UvrD_C_2
AAA_24
NAT10_TcmA_helicase
cobW
Zeta_toxin
MatP
ATP-synt_ab
AAA_18
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BAQ26595
LinkDB
All DBs
Position
725714..727120
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AA seq
468 aa
AA seq
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MRQEEALAILGTGANVFLTGAPGAGKTYVLNEFIRQARADGASVSVTASTGIAATHINGV
TIHSWSGIGLANALSDKLVTTIRMRRKRKLQAADILIIDEVSMLHAWLFDMVDQVCRIIR
KDSRPFGGLQVVLSGDFFQLPPVSVSGRDHDLIVPSPEFAASRERYARAGLNPEGFVTES
LVWQELSPVVCYLTEQHRQDDGKLLGVLTDIREGCVSDEDRDLLLTRLGRMPEPNQRAVN
LFPVNRQADSLNDMRLFAIREEPHEYVAESSGPANLVERLKRNMLAPEHLLLKTGAAVMA
VRNDTDRQFVNGSLGTVRGFASDAKGGWPIVEFENGNIVTMKPNCWQMQDGDTVLACVNQ
VPLRCAWAITIHKSQGMTLDRAVMDLRRTFAPGMGYVALSRVENLEGLYLAGVNERMFLV
SPDAVRLDGELRLGSANASDALARYGASAFMPLPSSDADDEFAQDALF
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcggcaggaagaggctcttgcgattctgggcaccggcgcgaacgtctttctgaccggt
gcgcccggtgccggtaagacctacgtgcttaacgaattcatacgtcaggcgcgtgcggat
ggcgcctccgtgtcggtcaccgcgtcgaccggcatcgcggccacgcatatcaatggagtt
accatccattcatggagtggcataggtcttgccaacgcgctgtccgataaactcgtcacc
accattcgcatgcgacgcaagcgcaagctgcaggcggccgacatcctcatcatcgacgag
gtttccatgttgcatgcgtggctgttcgacatggtcgatcaggtgtgccgtatcattcgc
aaggattcgcggccgtttggcggactgcaggtggtgctttccggagacttcttccagttg
ccgccggtgtccgtttccgggcgcgatcatgacctgatcgtgcccagtccggaattcgcg
gcatctcgtgaacgttatgcgcgtgccgggctcaatcctgagggattcgtcaccgaatcg
ttggtatggcaggagttgagccctgttgtctgctacctgaccgagcagcatcgtcaagat
gacggcaaactgcttggcgtactcaccgacatccgggagggttgcgtcagcgatgaggat
cgtgatcttctgttgacccggctgggccgtatgccagagccgaatcaacgggccgtgaat
ctgtttccggtcaacagacaggccgattcactcaacgacatgcgtctgttcgcgatcagg
gaggaaccgcacgagtatgtcgccgaatcctccggcccggcaaatctggtggaacggctc
aaaaggaacatgctcgcgccggaacatctgttgctcaagaccggagctgccgtgatggcg
gtgcgtaacgataccgaccgtcagtttgtgaacggctccttgggcacggtgcgtgggttt
gcctctgatgccaaaggcggctggccgatcgtcgagttcgagaacggcaatatcgtgacc
atgaagccgaactgttggcagatgcaggacggtgataccgtgctcgcctgcgtgaatcag
gtgccgttgcgctgcgcgtgggccattacgatccacaagtcgcaggggatgacgctcgac
cgtgcggtcatggatctgcggcgcactttcgcgcccggcatggggtatgtggcgttgtcg
cgggtggagaatcttgaggggttatatctggcgggcgtgaacgagcgtatgttcctggtc
tcgccggatgcggtgcggcttgacggcgagctcaggcttggttcggcgaatgccagcgat
gcgcttgccagatatggcgcctctgccttcatgccgttgccgtcgagcgatgcggacgac
gagttcgcccaggatgccctgttctga
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