Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0644
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Entry
BBDE_0644 CDS
T04222
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBDE_0644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdn03019
]
BBDE_0644
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_0644
Enzymes [BR:
bdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBDE_0644
Messenger RNA biogenesis [BR:
bdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBDE_0644
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBDE_0644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAQ26638
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All DBs
Position
774899..776860
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AA seq
653 aa
AA seq
DB search
MTAITDSRALDALKQYFGYEAFRPGQSGIVGSIIAGRDVLGVMPTGAGKSVCYQIPATIL
PGVAIVISPLISLMRDQVDALNDAGIPAAFINTTQTPDEQSSVFAQASAGFIKLLYVAPE
RLETERFRNFASRTPISLVAVDEAHCVSQWGQDFRSSYLGIGEFIANLPARPTVAAFTAT
ATERVRHDIVSMLGLRDPDVTVTGFDRPNLYFDVIKLETRHKAFWVAKYVAEHADESGIV
YCATRKETEALAASLNHAVAELRAADGADPGQAGPIAVAYHGGMSPDVRERAQRDFVTDR
VPVVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIV
TRRRLLDSDYENERLTPDEQEVVRRAKRRLLDAMVGYCRTTDCLHIYMTRYFGENDTVGG
TSDGKCAGGCTNCEHTFETVDVTETARAISRCVHDVNQNVGMGKIVKILRGSKAQDLSYL
NPESMPTFGMLEGVSEARIRDVLSQMATDGFLFISEGRLPIVKFGTRAAETVAPGFHYEI
KKIERTSPTKRGGAAHGTSYEAGDEISSTAVGSYIPDDDAEALFQRLRELRLDIAREIGK
PPYIVFSDRTLRDMARIRPVTNAQFLAVNGVGDNKLRLYGERFMNLIRSINAG
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgacggcaataacggattcccgggcactggacgcactgaaacaatacttcggctatgaa
gcgttccgtcccgggcaatccggcatcgtcggctccatcatcgccggacgcgacgtgctc
ggcgtcatgccgaccggtgcgggcaagtccgtctgctaccagattccagccacaatcctg
ccgggcgtcgccatcgtcatctcaccgctgatctcgctgatgcgcgatcaggtcgatgcc
ttgaacgacgccggcattccggccgcgttcatcaacaccacgcaaacgccggacgaacag
tcgtccgtattcgcacaggcctcggcaggcttcatcaaactgctgtacgtcgccccggaa
cgtttggaaaccgaacgtttccgcaacttcgcaagccgtacgccaatctcattggtcgcc
gtcgatgaggcacactgcgtatcccagtggggacaggatttccgctcgtcctacctcggc
atcggcgaattcatcgcaaacctgccggcacgtccgaccgtagccgcattcaccgcgacc
gcaacggaacgtgtacgtcacgacatcgtctccatgctgggattgcgcgacccggatgtg
accgtcaccggcttcgaccgaccgaacctgtatttcgacgtcatcaagctggaaactagg
cataaagccttctgggtggcaaaatacgttgccgaacatgccgacgaatccggcatcgtc
tactgcgcgacacgcaaggaaacggaggcgctcgcggcctcgctcaaccatgccgtggcg
gaattgcgcgcggcggacggtgccgatccggggcaggcgggtcccatcgcggtcgcctat
catggcggcatgtccccggacgtgcgtgagcgggcgcaacgcgacttcgtgactgaccgt
gtgcctgtggtcgtggccaccaacgcattcggcatgggcatcgacaaatcgaatgtgcgc
tacgtgatccaccacaacatgcctgaatccattgaagcctactatcaggaggcgggccgt
gccggccgtgacggcgaacccagccgctgcacgctactgtggaacgaatccgacatcgtt
acgcgtcgtcgactgcttgactctgactatgagaacgaacgactgacgcccgacgagcaa
gaagtcgtacgtagggccaagcgccgtctgctcgacgccatggtcggatactgccgtacc
accgactgcctgcatatctatatgacccgttatttcggcgagaacgatacggtcggcggc
acgtctgacggcaagtgcgcaggtggctgcaccaactgcgagcacaccttcgaaaccgtg
gacgtcaccgaaacggcacgagccatcagccgatgcgtgcacgatgtgaatcagaacgtc
ggtatgggcaagatcgtcaagattctgcgtggttcgaaagcgcaggatctgagctatctc
aatccggagagcatgcctacgttcggtatgctcgaaggtgtgtcggaggcgcgcatacgt
gatgtgctcagtcagatggcaaccgacggatttctgttcatctcagaaggacgtctgccg
atcgtgaaattcggaacgcgcgcggcggagacggtcgcaccgggattccattacgaaatc
aagaaaatcgagcgcacaagccccacgaaacgtggaggagcggcacatggaacgtcttat
gaggcaggcgatgagataagctccacggcggttggctcctatattcccgatgatgatgcc
gaggcgttgttccagaggctacgcgaactgcgcctcgacatcgcacgcgaaatcggcaaa
ccgccgtacatcgtgttttccgacaggacgttgcgcgacatggcacggatacgcccggtc
accaatgcgcaattcctggccgtcaatggcgtgggcgacaacaagctcagactgtatggc
gagcggttcatgaatctgatccgttcgatcaatgccggctga
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