Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_0895
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Entry
BBDE_0895 CDS
T04222
Name
(GenBank) putative exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03030
DNA replication
bdn03430
Mismatch repair
bdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBDE_0895
03430 Mismatch repair
BBDE_0895
03440 Homologous recombination
BBDE_0895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdn03032
]
BBDE_0895
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_0895
Enzymes [BR:
bdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBDE_0895
DNA replication proteins [BR:
bdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBDE_0895
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBDE_0895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
AcaB
Motif
Other DBs
NCBI-ProteinID:
BAQ26889
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All DBs
Position
1054284..1054922
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AA seq
212 aa
AA seq
DB search
MYWDRYINRNNPRRIEPLDKPLDTYVMLDTETTGLHPEEGATIIEIGALLVTPGNENARP
RFEQLVDPQRPLPEFISRLTGISDGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHN
AEFDIGFLDAAERAHDPDANEFDCRWLCTKEMSWELNPRKRHHRVSDLIVDYRIGDVEEH
RALSDAIQEQMIYRALCREASMRGRWGRERVS
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgtattgggatcgctacatcaaccgaaataatccacgtcgcatcgaaccactcgacaag
ccgctcgacacgtacgtgatgcttgacacggaaaccacgggactccatcccgaggaagga
gccacgatcatcgagatcggcgcattgctcgtgacgccgggcaacgagaacgcaaggccg
aggttcgagcagctggtcgacccgcaacgtccattgccggaattcatcagccgactcacc
ggcatcagcgacggcatgcttcgggacaagcccaccgccgatgccgcgatgctgcgcttc
caccaatggctcgacgacgtctggccgacagggaaacccttgaccatcatcgcccacaac
gccgaattcgacatcggcttccttgacgcggccgaacgcgcccatgatccggatgcgaac
gagttcgactgccgttggctgtgcacgaaggagatgagctgggagctcaacccgcggaaa
cgccatcaccgcgtcagcgacctgatcgtcgactaccgcatcggggacgtcgaggaacat
cgcgcgctgtccgacgcgatccaggagcagatgatctaccgggccctgtgccgggaagcg
agcatgcgagggaggtggggacgggaacgagtctcatga
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