KEGG   Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1338
Entry
BBDE_1338         CDS       T04222                                 
Name
(GenBank) ATP-dependent helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bdn  Bifidobacterium dentium JCM 1195 = DSM 20436
Brite
KEGG Orthology (KO) [BR:bdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bdn03400]
    BBDE_1338
Enzymes [BR:bdn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BBDE_1338
    5.6.2.6  RNA 3'-5' helicase
     BBDE_1338
DNA repair and recombination proteins [BR:bdn03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BBDE_1338
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD WHD_3rd_Lhr WHD_4th_Lhr Helicase_C ResIII Cas3-like_C_2 AAA_25 PhoH
Other DBs
NCBI-ProteinID: BAQ27332
LinkDB
Position
complement(1573854..1578629)
AA seq 1591 aa
MTDVIIERMYECLNLFSEPTKAWFEHAFKCPTDTQRQAWPAIRSGGNVLVTAPTGSGKTL
CAFLSAIDGLMGESAAGTVGDGGNTSGKPKRGVRVLYISPLKALGVDVAKNLETPLCGIA
DQCKASGLPAPKVRVCIRSGDTAPKERRAIVNHPPDILVTTPESLFLMLTSKARRILSTV
ETVIVDEVHAVAGSKRGAHLALSLERLDGLVGHPVQRIGLSATVNPPEEAARFLGGAQAV
RIINSGTRPAMDLKVVEPLEYVHGPKSSEARCRAGGVDSPNPRTPRISGVTPAMESLAER
KGIIRKATTGSPASPGLVGGSVWPAIERSVLDEILKHRTTLVFVNSRGLAEKLTARLNDM
HAGMCRSEPHDVGSPEGREGFAGHYDSVIGSTTMLVGSHADGDAIAMAHHGSVSKDRRKQ
IEERLKRGQLRCVVATSSLELGIDMGSVDLVIQIAPPLSISSGLQRVGRADHQVGGVSHA
LFYPITREQIIGTAACIESMRAGDIEPLTIPINPLDVLAQQTVAAAAMDDLDPDEWYGRV
RKAASFTDLDRSIFDAVMGMMTGAYDSEDFSVFRPPLQCNEESGLISARPGAQRLAVTSG
GTIPDRGMYTVVLPETDCGPGPRRVGELDEEMVYESREGDVITLGTSTWQIQEITRDRVV
VVPAPGRTARLPFWHGEGDGRDYGFGLAQGRFLREISQGLRARTAENFRHANVDGVDVES
RFDARIIARLRRDGLDDNAIGNLADLLEEQRAITGIIPNDRELVIERCRDEEGDWRIIIH
SPYGRRVHEPWAMAITTRIRQRYGFDGQVYAADDGIIIRLPDVDGALPIRELVLFDLDDL
HRIIEAQVGESVLYSARFRECAARSLFLPRTDPGRRVPLWQQRLRAAQLLNAARARQNFP
LLLETARECLQDVYDLPALRRIMTGLNSATIALSDVTTETPSPFAESMLFGFVGAVMYQY
DVPQAERSTRLLSMDPEVLERLLGGTDMSTVLDADVIRQVAHELAEKTFWNDLDKGDVTG
RVTRYAKTHGPFVADRMIADLDIDAVQAVRALDMLHAKGDLLTGHFADAEALADAALTDS
DSADVRSPIAHSSSPRAGTIGETDYGTSSQQWLHRDVFRRIRSRSLAKARNAIKPVSPQT
YQAFLLDRQGVGPVGGERYEGIDGLMRVIEQLEGVSLAAQIWESSVFSTRVRGYHPSMLD
ELIASGDVIWVGEGAGDTAAKEVGNIAFYPADSPLVSETVASDTAEDDEALTVPQAIITA
LQDGGAFHASQLSATAKSVWERHAEAQVDETTGEIIVPAWGESQFEEALWSLVWQGRVTN
SSFAPVRALMQGSGIARAPKATLRRRVRMHTAVPMTLGGLWSAVVAPRPIENGTATSNGG
MEEREIARIESLLDRYGVIAAPLIDKDRIAGGFSRLYPVLKRMEEHGMLVRGLFVDGFGA
AQFAGHDTVDALRSENQWHSQSCVALEVTDPASLTGAAIAWPELEPTKTEKADGSRGAKP
ARRTGSIVVFKQGEPVLFAVPKSHRIMAFTDAEGTLRQACSELVYALQRQSGGSISFNEM
NGISLKQRNKYMRLLHAAGFTESPQGMKLYR
NT seq 4776 nt   +upstreamnt  +downstreamnt
gtgactgatgtcataatcgaacgtatgtacgaatgtctgaacctgttttcggagcctacc
aaggcatggttcgagcatgcgttcaaatgcccgactgacacgcaaaggcaggcatggccg
gccattcgctccggtgggaacgtgctggtgactgcgcccaccggctccggtaagaccctg
tgcgcgttcctttcggcaattgacgggctgatgggggagtctgccgcaggtaccgtcggt
gatggtggaaacacgtcgggaaagcccaagcgcggcgtcagggtgttgtacatctcgcct
ttgaaggccttgggcgtcgatgtggcgaagaatcttgaaacgccgttgtgcggcatagcc
gatcagtgcaaggcctcgggattgcccgcgccgaaagtccgggtctgcatacgcagcggc
gacaccgcaccgaaggagcggcgcgccatcgtcaaccatccgccggatattctcgtcacc
actccggaatcgttgttcctgatgctcacatccaaggcccggcgcatcctttcgaccgtg
gagacggtgatcgtcgatgaggtgcatgccgtcgcaggctccaaacgtggcgcgcacctt
gccttgagtctggaacggttggatggcctcgtcggtcatccggtgcaacgtatcggtctg
tccgcaaccgtgaatccacccgaggaggccgcgcgattccttggtggcgcgcaagcggtg
cggatcatcaattccggaacgcgccccgcaatggatttgaaggtcgtggaacctctagag
tatgtgcatggtcccaaatcctccgaagccaggtgtcgggctggcggtgtggattctccg
aatccccgtactccgcgtatttccggagtgactccggccatggaatcgcttgccgaacgc
aagggcatcattcgaaaagcgacgaccgggagccccgcttcgccaggactggtaggcggt
tcggtatggccggccatagaacgcagcgttctcgacgaaatactgaagcatcgcaccaca
ctcgtattcgtcaactcccgagggctggcggaaaagctcaccgcacgcctcaacgacatg
catgccggcatgtgccgttccgagcctcacgacgttggttcaccggaaggacgtgaagga
ttcgccgggcactacgattccgtgattggatcgaccaccatgctggtcgggtcccatgca
gatggtgatgcgatcgccatggcccatcatggatccgtgtcgaaagacaggcgcaagcaa
atcgaggagcggctcaaacgaggccaactgcgatgcgtggtggccacttccagccttgaa
ctcggcattgacatggggtcggtggacctagtgattcagatcgcaccgccgttgtcgatc
tcttcgggattgcagcgggtaggacgcgccgatcatcaagtcgggggagtgtcgcatgcg
ttgttctacccgatcacgcgcgaacagatcatcggtacggccgcctgtatcgaaagtatg
cgggcaggtgatatcgaaccgttgacgattccgatcaatccgctggatgtccttgcccaa
cagaccgtggccgcggcggccatggacgatcttgatcctgacgagtggtatgggcgggtg
cgcaaggcggcctccttcacggatctggatcggtcgatcttcgatgcggtgatgggcatg
atgaccggtgcctatgatagcgaggacttttccgtattccgcccaccactgcagtgcaac
gaggaatccggactcatctccgcacgtcccggggcgcaacgcctggccgtgaccagtggc
ggaaccatccccgaccgaggcatgtacaccgtggtgcttcccgaaacggactgcggtccc
ggcccgcggagggtaggcgagcttgacgaagagatggtctatgagtcacgcgaaggcgac
gtgatcaccttgggtacctccacatggcagattcaggagatcacgcgtgatcgtgtggtg
gtggttcctgctcccgggcgtaccgcgcggctaccgttctggcatggcgaaggtgatggg
cgggactatggcttcggtctcgcccaaggccggttcctccgtgagatctcccaaggactg
cgcgcacggacggctgaaaacttcaggcatgcgaacgttgacggtgtcgatgtcgaatca
cgcttcgatgcgaggatcatcgcgcgactgcgccgtgacggactcgatgacaacgccatc
gggaatctggccgacctgctcgaagagcaacgtgccatcaccggcataatcccgaatgac
cgtgaactggtcatcgaacgttgcagggacgaagagggcgactggcgcattatcatccat
tcgccatacggaagacgcgtacacgagccgtgggccatggccatcaccacgcgcatcagg
cagcgatatgggttcgatgggcaggtgtatgcggccgatgacggcatcatcatccgcctg
ccggatgtcgatggtgccctgccgatccgtgaactggtgttattcgatctcgacgatcta
caccgcatcatcgaagcgcaagtcggcgaaagcgtgctgtattcggcacgattccgtgaa
tgcgcggcgcgctcgctgttcctgccacgcactgatcccggcaggcgcgtgccgctttgg
cagcaacgactgcgtgccgcccaactgcttaacgcggcccgtgcacgtcagaacttcccg
ctactgctggagaccgcgcgcgaatgcctgcaggatgtgtacgacctgccggcgttgcgg
cgaatcatgaccggactgaactccgcaacgatcgcactgagcgatgtgaccactgaaacg
ccgtcgccattcgcggaaagcatgcttttcggattcgtgggtgcggtcatgtaccaatac
gacgtgccgcaggccgagcgcagcacgcgattgctgtccatggatccagaggtgctggaa
cgtctgcttggcggcaccgacatgtccaccgtactggatgccgacgtaatcagacaggtt
gcgcacgagttagccgaaaagaccttctggaacgatctggataaaggcgacgttaccggt
cgagtgacccgctatgccaaaacgcatggtccatttgtcgcggaccggatgattgccgat
ctggacatcgatgccgttcaggctgtgcgtgccctcgatatgcttcatgccaagggggat
ctgcttacaggccacttcgctgatgccgaggcattggctgatgccgcattgacggattcc
gactccgctgatgttcgttcgccgattgcgcactcttcgtctcctcgcgcgggaaccatt
ggcgaaaccgattatggaacgtcgtcgcagcagtggctgcatagggacgtctttcgccgt
atccgctctaggtcccttgccaaggcgcgtaacgccatcaaaccggtcagcccgcagacc
taccaggctttcctgcttgaccgtcagggagtcggtccggtcggcggtgaacgctatgag
ggcattgacggtctgatgcgtgtcatcgaacagctcgaaggtgtgtctttggccgcccag
atctgggagtcctccgtgttttcgacgagagtgcgcggatatcatccttccatgcttgat
gagctgatagcctccggcgacgtgatctgggttggcgaaggggccggcgacacggccgcc
aaggaggtcggaaacatcgcattctatccggccgattcgccgctggtctccgaaacggtc
gcatcggatacagccgaagacgatgaggccctgaccgtaccgcaggccatcatcacggca
ttgcaggatggtggcgccttccatgcgtcacagttgtcggcgaccgccaaatcggtgtgg
gagcggcatgccgaggcgcaagtggacgaaaccacgggcgaaatcatcgttcccgcatgg
ggcgaaagccaattcgaggaagcgctttggtcactcgtatggcagggcagggtgaccaac
agctcttttgctcccgtacgggcattgatgcaaggttccggaatcgcacgtgcgccaaag
gccaccttacgcaggcgagtacgcatgcatactgcggtgccgatgacactgggcggattg
tggtccgcggtcgtcgcgccaaggccgatcgaaaacggaacggcgacatcgaacggtggc
atggaggaacgtgaaatagcgcggatcgaatcattgctggatcgatacggcgtcatcgcg
gccccactcatcgataaagaccgaattgccggcggattttcaaggctgtatcccgttctg
aaacgtatggaagagcacggcatgctggtgcggggcctgttcgtagatggcttcggtgcg
gcgcaattcgccggtcacgataccgtggacgcgttgcgcagtgaaaaccagtggcatagc
caatcctgtgtggcgcttgaggtgaccgatcccgcgagccttacgggcgcggcaatcgca
tggcctgaacttgagccgacgaaaaccgagaaggctgatggctcgcgtggtgcgaagccg
gcacgcagaacggggtcgatcgtcgtattcaagcagggtgagcctgtgctgttcgccgtg
ccgaaaagccataggatcatggcgtttaccgatgccgaaggcaccttgcgccaggcctgt
tcggaactcgtctacgcgctgcagcgtcagtccggcggtagcatcagcttcaacgagatg
aacggcatatcgctgaaacaacgcaacaaatacatgcggctgctccatgccgcaggcttc
acggaaagcccgcaaggcatgaaactctatcgctga

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