Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1506
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Entry
BBDE_1506 CDS
T04222
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03030
DNA replication
bdn03430
Mismatch repair
bdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBDE_1506
03430 Mismatch repair
BBDE_1506
03440 Homologous recombination
BBDE_1506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdn03032
]
BBDE_1506
03400 DNA repair and recombination proteins [BR:
bdn03400
]
BBDE_1506
Enzymes [BR:
bdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBDE_1506
DNA replication proteins [BR:
bdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBDE_1506
DNA repair and recombination proteins [BR:
bdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBDE_1506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
BAQ27500
LinkDB
All DBs
Position
complement(1777109..1780696)
Genome browser
AA seq
1195 aa
AA seq
DB search
MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVN
AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWA
ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILSKYSKGIIASSGCPSGIIQTRLLLGQF
DEALRAAGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRA
EDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERC
NVMFDDHEDGAFMPQFDCPEGWDETSLFLKKVEEGLEKRYDGNPPIEVLKQADYECGVIC
QMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFERFLN
PERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGFDF
SMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEAMGIE
GLIRQTGVHACATIMGSEPITNTSPLLERTDGTVTTTLEYHTCETLGLVKMDFLGLSNLT
VIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLKTLKPSN
FNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIVYQE
QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQAVWDIL
VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRMG
IQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNFPDFVRR
VPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFDLFSDLD
DSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLREMSIAH
LIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFFGKVYEAAAP
ELAVDTVVQIRGQVERRDETVSLRATEFQVPTLEAEDERPLVITLPQVALNRDHVMRLGR
ILNDHPGYCEVRLAIMDDQGNAKVLTFGDRFRVKRDTSLFAEIKILFGPSSLPMA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggctacttccggaaacttcgtgcaactgcataaccatacgcactattcgctgctcgac
ggcgcttcgaagataccggatctggtcaaacgcgccaaggaactgaacatgccggccgtc
ggcatcacggatcatggcaacatgcatggcgcctatgagatgtggagcaccgcagtcaat
gcgggcatcaagccaatcatcggcatcgaagcctatgtcacgccggaaaccgcacgccag
gacccgacccgagtgagctgggataccaactggaacccggatcttgacccgaaccatcgc
aaacgcaaccccaacgacgtgtccggcggcggcctgatcacgcatctgaccatgtgggcg
gagaccgacgaaggcctcgtgaacctcatgaaagcctcgaccgacgcgaacctggaaggg
cgtgtcatgcgttacccgcgcatggacaaggagatcctatccaagtattccaaggggatt
atagcctcatccggttgcccttcgggcatcatccaaacccgattgctgctcggtcaattc
gatgaggcactacgtgcggcgggggagctgcaggacatcttcggccgagacaacttctac
atcgaattcatggaccacgggctgaatatcgaaagacaggtgaccgacgggctgcttgac
atcgccaaaaagctcaatgcgccgttgctggcgaccaacgattcccattacgtgcgtgcg
gaggatgccggcgcgcaggacgccatgctgtgcatcaactccggctccaccctcgacgag
ccgggacgattcaagttcgacggtaccggctactacctgaaatccgccgaagagatgcgt
gaactgttcaaggaccttcccgaggcatgcgacaatacgctggagatcgccgaacgctgc
aacgtgatgttcgacgatcatgaggatggcgccttcatgcctcaattcgactgccccgaa
ggatgggacgagacctcgctgttcctgaagaaagtcgaagagggcctggaaaagcgatat
gacggcaatccgccgatcgaggtgctcaagcaggccgactacgaatgcggcgtaatatgc
cagatgcagttctgcggttacttccttgtcgtggccgactacatcaactgggccaagacg
cacggtgtgatggtggggcccggccgtggttccgctgcaggcgccatggtggcatacgcc
atgggcatcaccgaactcgacccgatccagcacggtctgattttcgaacgcttcctcaat
ccggagcgagtctccctgcctgatatcgacgtggatttcgatccggacggccgcggccgc
gtactcgactatgtcggcgagaaatacggtcgtgacaaggtggcgcaatgcgtgatctac
ggcaccatcaaaaccaagcaggccttgaaggattccgcacgcatcatgggcttcgacttt
tccatgggcgagcgcgtgaccaaggcgttgccaccggcgcagacgggcggcaaggacatc
ccgttgcacgatatcttcgatccggcctcgaaacgctatgccgaagcgcgtgagttccgg
gagctgtacgattccgatccggatgccaagcgtgtgaccgatgaggcgatgggcatcgag
ggtctgattcgtcagaccggcgtgcatgcctgcgccaccatcatgggtagtgagccgatt
accaacacctcgccgctattggaacgtaccgacggtaccgtcaccactacgctcgaatat
cacacgtgcgaaacgctgggtctggtcaagatggacttcctcgggctctccaacttgacg
gtgattcgtgacaccctgaacaacatcgaggcgaacggcaaggaccgcatcgaccatacc
aggattcctttggatgacaaggccacgtacgagttgctgtcgcgaggcgacacccttggc
gtgttccagctcgattccgacggcatgcgctcgctgctgaaaacgttgaagcccagcaac
ttcaacgatatctccgcgttgatcgccttgtaccggccgggccctatggatatggattcg
cataccaactatgcgaagcgtaagaacggcctgcagaagatcacgccgattcatcccgaa
gtggccgaaccgctcaaggaggtgcttgacgagacctatggtctgatcgtgtaccaggag
caggtgcagtcggccgcgcgaattctggcgggttactctttgggtaaggcagatgtgttg
cgccgagccatgggcaagaagaagccggaagtgttggccaaggagaaaatcccgttcttt
gcgggcatgaaggagcatggctactcgcaggaggcggcccaggccgtgtgggacattctg
gtgccgttctcggggtatgcgttcaacaaggcgcattccgccgcatacggtttgatctcc
tattggaccgcgtatctgaagacgcactatccggtggaattcatggccgccctgctacag
ggcgccagcaccaataaggacaagaccgcactgtatctcggcgaggcgcggcgcatgggc
attcaggtgctgtctccggacgtgaatgagtcggtattcgaatattcggcggtcggcgat
gtcgtgcgattcggtctcggtgccatccgcaatgtcggcaggaacgccgtcgatgacatc
atcaaggagcgcgagagcggtcatggcaagtatgtgaacttcccggatttcgtgcgtcgc
gtgccgttgagtgccttgaaccgtcgtctggtggaatcgttgatcaaggccggagccttc
gattcggtcgatccgaaccgtcgtgcgctgttcaccattcatgaggctgccatcaattcg
gtggtgggcatcaagcgcaagcaggcggaagggcagttcgatctgttctccgatctggat
gattcggccgaacaagacggcatgggagacgccatggtgagcgtgccggatgtggaggaa
tgggataagaaaaccaagctcaacttcgagcgtgagatgctgggcctgtatgtgtccgac
catccgttgagcggcatgcagtcggtgttgtcgagtctgcgtgagatgtcgatcgcgcat
ctgatcgatcgcgccggaaccatgcctgacgggcagcaggtcacggtagccgggctgatt
acgaatgtggaccgtcgcgtatcgaagaagggcaatccttgggcgatcgtcaccatcgag
gatttggaaagctccatccagtgcatgttcttcggcaaggtatatgaagcggccgcgccg
gaactggcggtcgacaccgtagtgcagatccggggccaagtcgagcggcgcgacgaaacc
gtgagtctgcgtgccacggaattccaggtaccgaccttggaggcggaggacgagaggccg
ctcgtgatcacgctgccgcaggttgcactgaaccgtgatcatgtgatgcggctcgggcgg
attctgaacgaccatcccggctattgcgaggtgagacttgccatcatggacgatcagggc
aacgccaaggtgctgaccttcggcgatcgcttccgcgtgaagcgggacacctccctgttc
gccgagatcaagattcttttcggtcccagctccttgcccatggcctga
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