KEGG   Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1559
Entry
BBDE_1559         CDS       T04222                                 
Name
(GenBank) CRISPR-associated helicase
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
bdn  Bifidobacterium dentium JCM 1195 = DSM 20436
Brite
KEGG Orthology (KO) [BR:bdn00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:bdn02048]
    BBDE_1559
Enzymes [BR:bdn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BBDE_1559
Prokaryotic defense system [BR:bdn02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    BBDE_1559
SSDB
Motif
Pfam: Cas3-like_C_2 DEAD ResIII Helicase_C HD Cas3_HD PhoH Terminase_6N DUF726
Other DBs
NCBI-ProteinID: BAQ27553
LinkDB
Position
complement(1842570..1845032)
AA seq 820 aa
MNSKQLLARKDATGAVQTLRDHLHGAGKLARDFEEEFSAISYTAALLHDLGKASEDFQEY
LLSAKGHRGSVIHAWQGAFLVDDACALSSEKSAAEQAVQEITREILELAIAKHHGELPDC
LDVDGFSTFFDGLATDRKNEIRFSYQEVKDRISYLDLDIAGNYDKSIRDVEHFMQKFNMG
GITNSDSFYFYLGLFAKYVYSRLIDADRLDAACFEERRTYRSKSIDWSSLIDRFEKNIRK
FDHTSEINKIRNQISEQCRLEGKRSTGIYRLAVPTGGGKTLASLNFALHHAIETNKRRII
YVIPYLSITSQTVKVFREILELDEDDTETLLEHYSSAGGRKDDDTFTNTQSEFDQEEDDE
QNAKRKLATERWDSQIIVTTMVRFLETVMSSKSGDLRRFHNMADSIIIFDEIQSLPTNAI
NLFNEVVSFLSKILGSTIVLCSATQPLLERTSRKNLLLADCPNLIDDSQEYFEKLRRTCV
VAATEMKNCDELAEIIYEKAKENGNCLAIVNLKSEARIIYQCLKTLNGDNHFKIIHLSTS
MCGQHRTDKLELVRQLTSIDKGKPVICISTQLIEAGVDVSFSCVIRAMAGLDSILQAAGR
CNRNGESKSPKKVYVFGIKDEKGLSYLPDIKMGKEITERMVREHPDEDLLSNEMLLEYYQ
LFFEGIQSGNDNGFGIMDYPIPGKQNLYAYDLLSCNRAARGQYVNSSGTQYLKVYAQAFK
TVGNRFRVIPNQNHNVVVPYGRVEKHMERLSRGNLREQFAALRQLQDYSVSLFDNEYRSL
DERGAITLENEDFGIYMLNKDYYKEEYGVVTETEMSLLYI
NT seq 2463 nt   +upstreamnt  +downstreamnt
atgaactcgaaacaattgcttgcacgcaaagacgcgactggagctgtacaaactctccgt
gatcatttgcacggcgcgggaaaactggcgagagacttcgaagaagaattctctgcgata
tcgtacactgctgctttgttgcatgacctcggaaaagcttcagaagattttcaggaatat
ctgttatctgcaaagggacatcgcggttctgtaattcatgcatggcagggagctttttta
gttgatgatgcatgtgccttatcttctgaaaaatcggctgctgagcaggcggtacaagag
atcactagggagatacttgaacttgccattgctaaacatcatggtgagttgccggactgt
ttagatgtggatggattctcgactttttttgacggtcttgctacggatcggaagaatgaa
atcagattctcgtatcaagaagttaaggacagaatctcgtatcttgaccttgatattgct
ggtaattatgacaaaagtatcagggatgtcgagcatttcatgcagaaatttaatatggga
ggcataacaaattcagatagcttttatttctatcttgggttatttgccaaatatgtgtac
tctcgattaattgatgcagatagattagatgctgcttgttttgaagaacggagaacatac
agatccaaatcgattgattggtcatctttgatcgatcgtttcgaaaagaatataagaaag
tttgatcatacctctgaaatcaataagattcgtaatcaaatttccgagcaatgccgcttg
gaggggaaacgaagtactggaatttatagattagctgttccaacaggtggaggtaagaca
ctggcctcacttaattttgctttacatcatgcaatagagaccaataaaagacgaatcata
tatgtaattccatacctgtcgattacttcgcagaccgtgaaggtttttcgtgagattctc
gagctggatgaggatgatactgaaacactactcgaacactattcatccgcaggtggaaga
aaggatgatgatacatttaccaatacacaatccgaatttgaccaagaagaggatgacgaa
cagaatgcaaaaagaaaacttgctaccgaacgttgggacagtcaaatcattgtgactacc
atggtcagattcttagaaacagtaatgtcctctaagagtggcgatctccggagattccac
aacatggcggatagcattatcatattcgatgaaattcaatcgctgcctacgaacgctatc
aatcttttcaatgaagtagtaagttttctttctaaaattctgggctcgactatagtgctt
tgttcggctacgcaaccgctgcttgaacggaccagtagaaaaaacctattgttggcggat
tgtccgaatcttattgatgattctcaagaatatttcgagaagctgagacgtacatgcgta
gttgctgcaacagaaatgaaaaactgtgacgagttagctgaaataatttatgagaaggca
aaggaaaacggcaattgcttagccattgttaatcttaaatctgaggcgagaataatatat
cagtgtcttaaaacattgaatggagacaatcactttaaaattattcatttgagtacttca
atgtgtggtcagcataggacagataagcttgaactcgtccggcaattgactagtatcgat
aaaggaaagccagtaatttgcataagtacacagcttattgaggcgggagtagatgtttcg
ttttcttgcgttattcgtgccatggcaggcctcgatagcattctacaagctgctggtcgt
tgcaatcgaaatggcgagtcaaaatcgccgaaaaaagtttatgtatttggaatcaaggat
gagaaagggttgagttatttacctgatatcaaaatgggaaaggagattaccgagcgaatg
gttcgggagcatcctgacgaagatcttctttccaatgaaatgctgttggaatattaccag
ctgttcttcgaaggcatacaatccggtaacgataatggatttggaattatggattatcca
attccaggaaagcagaacctatatgcgtacgatttactttcctgtaatcgtgcagcaaga
ggtcagtatgtcaatagctcggggacgcaatacttgaaggtatatgctcaagcatttaaa
actgttgggaatcgattccgtgtcattcccaatcagaatcataatgtcgtggtaccttat
ggacgtgtagagaagcacatggagcgactttcaagggggaatttaagagagcaatttgcg
gcgcttcgacagttgcaagattactcggtgtcattatttgataatgagtaccgcagtctg
gatgagcgaggagcaattactctggaaaatgaggattttggtatctacatgttgaacaaa
gattattacaaggaagaatatggtgttgtgacggagacagagatgtctttactctacatc
tga

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