Bifidobacterium dentium JCM 1195 = DSM 20436: BBDE_1662
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Entry
BBDE_1662 CDS
T04222
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bdn
Bifidobacterium dentium JCM 1195 = DSM 20436
Pathway
bdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBDE_1662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdn03019
]
BBDE_1662
Messenger RNA biogenesis [BR:
bdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBDE_1662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
BAQ27656
LinkDB
All DBs
Position
complement(1988586..1990526)
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AA seq
646 aa
AA seq
DB search
MATEETKKKTTHKRGSKAVKRTDSAAKKESATTRKSSGRTRNANGAGRGKGTGTRSAGNR
RSTRPAPQATAPQQDSVLIAPPKYRKGSMRIVPLGGLGEIGRNMNVVEYNGHLLLIDCGV
LFPEEEQPGVDLILPDFHYIKDRLDKVEALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKL
TLAFAEAKCKEHHINPTLVEVKGRDKLKVGPYNLEFVNVTHSIPDALAVFVQTPAGSLID
TGDIKLDQLPLDHRITDLVEFGKLGEKGVDLLMMDSTNAEVPGFVKPETSIGPALDQAFA
QATRKIIVASFSSHVHRVQQVVDAAHKYGRKVVFVGRSMVRNMSIAADLGYLRLPEDTVI
DLKQSHDVQDDKLVYMCTGSQGEPMAALGRIADGNHRDITINEFDTVILASSLIPGNEHE
VYKVINKLVQLGARVVNRDNAAVHVSGHCNEGELLYMYNIVKPKCAMPIHGENRHLVANG
MIAVKTGVDPQNVVLAEDGDVVDLYHGQAAVVGSVPCGYVYVDGDSVGELTDEELEKRRI
LGTEGFVSSFVVVDTETADVIAGPKIYLNAVAEDESEFDKVRHQIVEQLRDAMMTGTHDT
YKLQQLMRRTLGSWVARQLHRKPMIVPVVADIAQDVDDAAGVTAAK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggctacagaagaaaccaagaaaaagacaacgcacaagcgcggcagcaaggctgtcaag
cgcactgattccgcggcgaagaaggagagcgcaaccacgcgcaagtcttccggccgcact
cgtaatgccaacggcgccggccgcggcaaaggcactggcacccgttccgcgggcaatcgc
cgttccacccgtccggcaccgcaggccaccgcacctcagcaggattccgtgctgatcgcc
ccgccaaagtaccgcaagggctccatgcgcatcgtgccgctgggcggtttgggtgagatc
ggtcgcaatatgaacgtggtcgaatacaatggccacttgctgctcatcgactgcggtgtg
ctgtttccggaagaggagcagccgggcgtggacctgatcctgcctgacttccactacatc
aaggatcgtctcgacaaggtcgaggctctggtgctcacccacggtcatgaggaccacatc
ggtggcgtaccgtacctgctgaaactgcgcccggacattccactgatcggctccaagctc
acactggccttcgcggaggccaagtgcaaggagcaccacatcaatccgacgcttgtcgag
gtcaagggccgcgacaagctcaaggtgggcccatacaaccttgaattcgtgaacgtgacc
cactccatcccggacgctctggccgtattcgtgcagactccggccggttccctgatcgac
accggcgatatcaaactcgaccagctgccgcttgaccatcgcatcaccgatctggtggaa
ttcggcaagctcggcgaaaagggcgtggaccttctgatgatggactccaccaacgccgag
gtgccgggcttcgtcaagccggagacctccatcggtccggcccttgaccaggcgttcgcg
caggctacccgcaagatcatcgtggccagcttctccagccacgtgcatcgcgtgcagcag
gtcgtcgacgccgctcacaagtacggccgcaaggttgtgttcgtcggccgttccatggtg
cgcaacatgtccatcgcagccgatttgggctacttgcgtctgccggaagacaccgtcatc
gacctgaagcagtcccatgatgtgcaggacgacaagctcgtctacatgtgcaccggctcc
caaggcgagccgatggccgccttgggccgtatcgccgacggcaaccaccgcgatatcacc
atcaacgaattcgacacggtgattctggccagctccctgatcccgggcaacgagcacgag
gtctacaaggtcatcaacaagctcgtgcaattgggtgcgcgtgtggtcaaccgcgataat
gcggccgtgcacgtctccggccattgcaacgagggcgagctgctgtacatgtacaacatc
gtcaagccgaagtgcgccatgccgattcacggtgagaaccgtcacttggtggccaacggc
atgatcgccgtcaagaccggcgtcgatccgcagaacgtcgtgctggctgaagatggcgac
gtcgtcgacctgtaccatggccaggccgcggtcgtcggttccgtgccgtgcggctacgtg
tatgtggatggcgattccgtcggcgagcttacggatgaggagcttgagaagcgtcgtatt
ctcggcactgaaggattcgtgtccagcttcgtggtcgtcgacaccgaaaccgccgatgtg
attgcggggccgaagatctatctcaacgccgttgccgaggatgaaagcgaattcgacaag
gtgcgtcaccagatcgtcgagcagttgcgggatgccatgatgaccggtacccacgatacg
tacaagctgcagcagctcatgcgccgcacgcttggcagttgggtggcccgtcagctgcat
cgcaagccgatgatcgtgccggtcgtggccgacatcgcgcaggacgtcgatgacgctgcg
ggcgtaactgcggccaagtga
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