Phocaeicola dorei HS1_L_1_B_010: EL88_03035
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Entry
EL88_03035 CDS
T03262
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bdo
Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EL88_03035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdo03019
]
EL88_03035
03400 DNA repair and recombination proteins [BR:
bdo03400
]
EL88_03035
Enzymes [BR:
bdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EL88_03035
Messenger RNA biogenesis [BR:
bdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EL88_03035
DNA repair and recombination proteins [BR:
bdo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EL88_03035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
DUF4045
Motif
Other DBs
NCBI-ProteinID:
AII62199
UniProt:
A0A076J5E7
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All DBs
Position
complement(678422..680239)
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AA seq
605 aa
AA seq
DB search
MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS
PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPERLLIETNF
LLKDIQISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATADKITRKDIA
QQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIYCMSRSKTE
SVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNVRWVIH
YNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATESSQQEINLEKLHRMQQ
YAESDICRRRILLNYFGETMDHDCGNCDVCRNPPERFDGTIIVQKALSAIARTNQQIGTH
MLIDILKGSANQELIDKGYDKLKTYAAGRDIPARDWQDYLLQMLNLGYFEIAYNENNHLK
ITESGQKVLFGKEPAMLVVIKREEFIPAKEKRKKKAKEEVLFPTPVTFGNENKDLFEELR
VLRKKLADQQAIPAYIVLSDKTLHLIATQQPTTIEAFGNINGIGEYKKEKYGKDFIELIK
KVLQE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaactctaaaaaattacttcggatacgatagtttccgtcctttacagcaagat
attattcaaaatatattagctcaaaaggatactttggtattaatgcctacaggaggaggg
aaatccatctgttatcaattaccggctttactgatggaaggtacggccattgtcgtttca
cctcttatttctttaatgaaagaccaggtggaaagtttacaagcaaacggaattgcagca
cgggcactgaacagcagcaataatgaaacagaaaatataaacctacgtcgcgaatgtctt
caaggaaaaatcaaattgctttatatttcacctgaacgattacttatagaaacaaatttc
ctgttgaaagatatccaaatatctttatttgccattgatgaagctcattgcatctcacaa
tggggacatgatttccggcctgaatatacccaattaaaggtactacgtaatcagtttccc
aaagtaccgatcgtagcattaactgctacagctgacaaaataacccgaaaagacattgca
caacaattggccttgaaagatcctaaaatattcatatcttcctttgatcgtcccaatctg
agtttggaagtaaaaagaggctaccaacaaaaggataaggcacggactatccttgaattt
atagaaaaacacaaaaatgaatgtggtatcatttattgcatgagccgcagcaaaacagaa
agtgtggccgcaatgctgatgaaacaaggtatccgtgcaaccgtttatcatgcaggatta
agcagtgatatgcgtgataaagcacaaaatgatttcataaacgatcgtgtacaggtagtg
tgtgccactattgctttcgggatgggaattgataaatccaatgtacgctgggttattcat
tataaccttcctaaaagcatagaaagtttctatcaagaaataggacgtgccggacgtgat
ggtatggaaagtgatactttgctgttctattcactgggagacttggttatgctttccaaa
ttcgctacagaaagcagccagcaggaaattaacttagagaaattacaccgaatgcaacaa
tatgctgaatcggatatctgtcggaggcgtattctgctgaactattttggtgagacaatg
gaccatgattgcggcaactgtgatgtgtgccgtaatccccccgagcgctttgacggaaca
atcattgtacaaaaagctttaagtgcaatagcccgaactaaccaacaaataggcacccac
atgttaatagacatattgaaagggtcagcgaaccaagaactgattgacaaaggttatgac
aaactgaaaacatatgctgcaggaagagatattcctgcacgcgactggcaagattatctg
ctgcaaatgctgaatctaggctatttcgaaatagcctataatgaaaacaatcacctcaaa
ataactgaaagcgggcaaaaagtattgttcggcaaagaacccgccatgctggtagtcatc
aaacgggaagaattcatacctgctaaggaaaaacgtaaaaagaaagccaaggaagaggta
ctctttcccactccggttacttttggtaatgaaaacaaggacttgttcgaggagttacgt
gtactgcgtaaaaaactggcagaccagcaagctatacctgcctatattgttctatccgac
aagactttgcacctgatcgccacccaacaacctacaactatagaagcattcggcaacatc
aatggtatcggcgaatataagaaagaaaaatacggaaaagattttatagagttgataaaa
aaggtattgcaagaatga
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