KEGG   Phocaeicola dorei HS1_L_1_B_010: EL88_15955
Entry
EL88_15955        CDS       T03262                                 
Name
(GenBank) RNA polymerase sigma70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
bdo  Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo02020  Two-component system
Brite
KEGG Orthology (KO) [BR:bdo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    EL88_15955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdo03021]
    EL88_15955
Transcription machinery [BR:bdo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     EL88_15955
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_1 GerE HTH_10 HTH_Tnp_ISL3 HTH_23 HTH_30 HTH_24 Ldh_1_C Muted
Other DBs
NCBI-ProteinID: AII64552
LinkDB
Position
3450933..3451499
AA seq 188 aa
MPNTAMEATELLKEIQKHDSQQAFRSLYDMYYDRFFRIAFYYLQRDEWAQEVILDVFTTL
WNHRKSQLIPDDFNKYSYILIRNAALNYLEKEQRREASPLENMPEISSSNLSPEEQMMNE
ELFNIYENSLNELPERCRTIFIKVREEKQSYASVAEELNISPKTVDAQLQKAVTRLKEKI
NNYFRNRR
NT seq 567 nt   +upstreamnt  +downstreamnt
atgcccaacacggcaatggaggcaactgaactactcaaagaaatacagaagcatgattcc
caacaggctttccggtctttatacgatatgtattatgaccgtttctttcgtatcgccttt
tattaccttcaacgggatgaatgggctcaagaagtaattttagatgtttttaccacgctt
tggaatcatcgaaaaagtcagcttattcccgatgattttaataagtacagctatatatta
ataagaaatgccgctctgaactatttggaaaaagaacaaaggagggaagcctcgcctctg
gaaaatatgccggaaatatcttcttccaacctttctcctgaagaacaaatgatgaatgaa
gagttatttaacatttatgagaactcactgaatgaattacctgaacgttgccgaacaatc
tttattaaagtccgcgaagaaaaacaaagttatgcttccgttgccgaagaacttaatata
agccctaaaacagtagatgcccagttacaaaaagctgtaacccgactcaaagaaaaaatt
aacaattattttagaaatagacgatag

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