Phocaeicola dorei HS1_L_1_B_010: EL88_16260
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Entry
EL88_16260 CDS
T03262
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bdo
Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EL88_16260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdo03400
]
EL88_16260
DNA repair and recombination proteins [BR:
bdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EL88_16260
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EL88_16260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
AAA_21
UvrA_DNA-bind
AAA_16
AAA_29
nSTAND3
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_22
AAA_33
ATPase
AAA_14
NACHT
SLFN-g3_helicase
Viral_helicase1
cobW
Septin
Motif
Other DBs
NCBI-ProteinID:
AII64611
UniProt:
A0A076IS88
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All DBs
Position
3540609..3543410
Genome browser
AA seq
933 aa
AA seq
DB search
MSESNYISIKGAKVNNLKNIDVNIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESL
SSYARQFLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGK
TYSPISGQLVKKHNIEDIVSCMLSFPKGTKYTVLTPMMPREGRTLRQQLEMDFKQGFTRV
EVNREIVRIEDFLQQTAAEDKRQNIYLLVDRMTADDSKDSISRLTDSAETAMYEGDGNCL
LRFYSADGSTQLFSFSTKFEADGIKFEEPNDQMFSFNSPLGACPECEGFGKVIGIDEHLV
IPNRALSVYDGAVLCWRGEKMGEWLQEFIHEAPAHDFPIFAPYYELTQEQKDYLWHGPRN
KACIDSFFRMLEENQYKIQYRVMLARYRGKTICPVCHGTRLKKEAGYVKVGGKSISQLVD
LPIHDLKEFFRTLELDAHDTAIAKRILTEITNRINFLMDVGLGYLTLNRLSNSLSGGESQ
RINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIKVLRQLQELGNTVVVVEHDEEIIRA
ADYIIDIGPQAGRLGGQIVYQGSMNDLQRNSNSYTVRYLLGEENIEIPRCHRPWNNYIEI
KGARENNLKGIDVKFPLNVMTVVTGVSGSGKSTLVRDVFYKALKREYSEASERPGEFISL
EGDVQLVKDIEFVDQNPIGKSSRSNPVTYVKAYDEIRKLFAEQPLAKQMGYTAGYFSFNT
EGGRCEECKGDGTVTVEMQFMADLVLECESCHGKRFKSDTLEVKFQDKNIYDILEMTVNQ
AIEFFTEYNQKKIVKKLTPLQEVGLGYIKLGQASSTLSGGENQRVKLAYFLSIEKAQPTI
FVFDEPTTGLHFHDIKKLLEAFEALISRGHTIIIIEHNMDVIKCADHVIDLGPEGGNMGG
NLVVAGTPEEVAACAASYTGQFLKEKLAMDSPD
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagtaactatatatccataaaaggagcaaaggtaaacaacctcaaaaacatc
gatgtcaacataccacgcaataagctggtcgttatcacgggcctatccggttccggaaaa
tcatcattggcttttgatacattatacgctgaaggtcagcgacgctatgtagaaagcctg
tcatcatacgcccgccaatttctgggccgtatgagcaaacctgagtgtgatttcattaaa
ggtataccacccgctatcgccatagagcaaaaagtgaacagccgcaatccacgttccacc
gtggggacttccaccgaaatatatgagtatctgcgactactctatgcacgcgtggggaag
acttattctcccattagcgggcaactggtgaaaaagcataatattgaagatattgtaagc
tgtatgctctcctttcctaaaggaacaaaatacacggttctcactcctatgatgccccgt
gaaggccgtacactgcgtcaacagctagaaatggactttaaacaaggattcacccgtgta
gaggttaaccgtgaaatagttcgtatagaagattttctgcaacaaacagctgccgaagat
aaaagacaaaacatctatctgctggtagatcgcatgacagccgatgatagcaaagacagt
atcagccgcctcaccgattctgccgaaacagccatgtacgagggagacggaaattgcctc
ctccgcttctactctgctgacggaagtacgcagctattctctttcagcactaaattcgaa
gccgacggaattaaattcgaagaaccgaatgaccaaatgttttcattcaattcccctctc
ggagcttgtcccgaatgcgaaggcttcggtaaagtgataggtatagatgaacatctggtg
attccaaaccgtgctctgagtgtatatgacggagctgtcctctgctggcgcggagaaaag
atgggggaatggttacaagaattcattcatgaagctcccgcccacgattttcccatcttt
gccccttattatgaactgacacaggaacaaaaagattatttatggcatggccctagaaat
aaggcctgtatagattctttcttcagaatgctggaagaaaatcaatataaaatacaatat
cgtgtgatgctggcacgataccggggaaaaactatttgtcctgtctgccatggaacacgc
ttgaaaaaagaagccggttatgtaaaagtaggtggaaaatccatttctcaactggttgac
ttacctattcatgacttaaaagaattcttccgcactctagaactagatgcacatgataca
gccatcgccaaacggatcttaacggaaattaccaaccgcatcaacttcctcatggatgta
ggtttgggatatcttacactgaaccgtctcagcaactcactctccggcggcgaaagtcag
cgcatcaatctggccacctcattaggcagcagcttggtaggctcactctatattctagac
gaacccagtatcggattacacagccgtgacactgaccggctgataaaagtacttcgtcag
ttacaggaactgggaaacaccgtagtagtggtagaacatgatgaagaaataatccgtgct
gccgattatatcattgatatcggtcctcaagcaggacgtttaggaggacagatagtatat
caaggcagcatgaacgatcttcaaagaaacagtaatagttatacggtacgctatttgttg
ggagaagaaaacatagagatcccccgatgccatcgtccgtggaacaattatatagaaata
aaaggtgcacgtgaaaacaaccttaaaggcattgacgtaaaatttccactgaatgtaatg
acggtagttacgggggtcagcggttcgggaaagagtacgttggtacgtgatgtcttttac
aaggcattgaaacgcgaatatagtgaagctagcgaacggccgggtgagttcatctctttg
gaaggggatgtacagctagtgaaagatattgaatttgtagaccagaatcctatcggaaaa
tcatcacgcagcaatccggtgacctatgtaaaagcatacgacgaaatacgcaaactcttt
gccgaacagcctcttgccaaacaaatgggatatactgccggatatttctcattcaatacc
gaaggcggtcgttgtgaggaatgtaaaggtgacggtacggtaaccgttgaaatgcaattt
atggcagatttggtattagaatgtgaatcttgtcatggaaaacgtttcaagagcgacaca
ctggaagtaaaatttcaagataagaacatctatgatattctggaaatgacagtgaatcaa
gctatcgaattcttcaccgaatacaatcaaaaaaagatagtgaaaaaactaaccccatta
caagaagtgggattgggatatataaagttgggacaagcctcctccactctttccggtggc
gagaatcaacgcgtaaaactagcctattttctgagcatagagaaagcacaacccactatt
tttgtattcgatgaaccaaccacaggtctgcattttcatgatatcaagaaactgctggaa
gcatttgaagccttaatcagccgcggacataccattatcattatcgagcataatatggat
gtgataaaatgtgccgaccatgtgattgacctagggcccgaaggaggaaatatgggagga
aatctggtagttgcgggcactccggaagaggttgcagcatgtgcggcatcttatacggga
cagtttttgaaggaaaaactggcgatggattctcctgattga
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