Phocaeicola dorei HS1_L_1_B_010: EL88_23320
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Entry
EL88_23320 CDS
T03262
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bdo
Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EL88_23320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdo03021
]
EL88_23320
03400 DNA repair and recombination proteins [BR:
bdo03400
]
EL88_23320
Enzymes [BR:
bdo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EL88_23320
Transcription machinery [BR:
bdo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EL88_23320
DNA repair and recombination proteins [BR:
bdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EL88_23320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AII65903
UniProt:
A0A076J380
LinkDB
All DBs
Position
complement(5290314..5294600)
Genome browser
AA seq
1428 aa
AA seq
DB search
MAFRKETKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIVYYERYVVIQPGVKAEDGINKYDLLSEEEYLDILDTLPKENQYLED
TDPNKFIAKMGAEAIYDLLSTLDLDALSYELRHKASNDSSQQRKNEALKRLQVVESFRAS
RGRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPHMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNDAILEAQMLMLQAHNILNPANGAPITVPAQDMVLGLYYITKLRKGAKGEGLTFY
GPEEALIAYNEGKVDIHAIVNVVVKDLDKDGKIVDVMMKETSVGRVIVNEIVPAEVGYLN
TIISKKSLRDIISDVIKAVGVARACEFLDGIKNLGYYMAFKGGLSFNLGDIIIPKEKEEL
VKRGNEEVEQIMMNYNMGFITDNERYNQVIDTWTHVNSDLSDILYKTIKNDDQGFNSVFM
MLDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGAQIIENPILSNFKEGLSVLEYFISTHG
ARKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTALKNNDEVIATLYER
ILGRVSVHDIVHPTTGKLIVAGGEEITEDIAQEIEDSPIESVEIRSVLTCESKKGVCAKC
YGRNLASSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGIAGNMAANASIVAKNNARL
EFEELRTVDTVDEMGEAVKVVVGRLAEVRFIDVNTGIILSTHNVPYGSKLYAADGDIVEK
GKLIAKWDPFNAVIITEATGKIEFESVVENVTYKVESDEATGLREIIIIESKDKTKVPSA
HIVTEDGNLIRTYNLPVGGHVVVENGQAVKAGDIIVKIPRAVGKAGDITGGLPRVTELFE
ARNPSNPAVVSEIDGEITMGKIKRGNREIIVTSKTGEVKKYLVNLSKQILVQENDYVRAG
TPLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVEID
EPGDTRFLEQQVVDKQEFMEENDRIWGKKVVVDAGDSQNLQPGQIVTARKLRDENSMLKR
RDLKPVEVRDAIPATSTQILQGITRAALGTSSFMSAASFQETTKVLNEAAINGKVDRLEG
MKENVICGHLIPAGTGQREFEKIIVGSKEEYDRILANRKNVLDYSEVE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagaaactaagataaagagtaatttctcgaaaatctcaattggcttg
gcttcacccgaagaaatccttgagaattcgagcggtgaggtgttgaagcctgaaacgatc
aactaccgtacttacaaaccggaacgtgatggtttgttctgcgagcgtattttcggtccg
gtgaaagattacgaatgtcattgcggtaagtacaaacgtatccgttataaaggtattgtt
tgtgaccgatgtggcgttgaagtgactgaaaagaaggtccgtcgtgaacgtatgggacat
attcagttagttgtgcctgtagcgcatatttggtattttcgttcattgccgaacaagatc
ggttatttgttggggctgcctacaaagaaactagacgctattgtatattatgaacgttat
gtggttattcagccgggtgtgaaggctgaagatggcattaataaatatgatttgctttct
gaagaagagtatttggatatcttggatacacttcctaaagaaaaccaatatttggaagat
acagatccgaataagtttattgctaagatgggggcagaagctatttatgatctgctctca
actttggatttggatgctttatcttatgaattacgtcataaagcaagtaatgattcttcg
cagcaacgtaagaatgaggctttgaagcgtctgcaggtagttgaatcgttccgtgcatct
cgcggacgtaataaacctgaatggatgattgtacgtattgtgccggttattcctcctgaa
ctgcgtccattggttccgttggatggtggccgttttgctacctctgacttgaatgacttg
tatcgtcgtgtgattatccgtaacaaccgtttgaagagactgattgaaatcaaggctccc
gaagtgattttgcgtaacgaaaaacgtatgttgcaggaggctgtcgattccttgttcgat
aactcacgtaaatcaagtgcagtgaagactgacgctaatcgtccattgaaatcactgtcc
gatagcttgaagggtaagcaaggacgtttccgtcagaacttgctgggtaagcgtgttgac
tactctgctcgttcggtaatcgttgttggtcctgaattgaagatgggtgaatgtggtatt
cctaaactgatggctgcagagctttacaagccgtttatcatccgtaagttgattgaacgt
ggtattgtgaagactgtaaaatctgcaaagaagattgtagaccgcaaggagcctgtgatc
tgggatatcttggaacatgtcatgaaaggtcatcctgtattgctgaaccgtgcgccgact
ctgcaccgtttgggtattcaggctttccaaccgcatatgattgaaggtaaagctattcag
ttgcacccattggcttgtacagcgttcaatgccgacttcgatggtgaccagatggcggtt
cacttgcctttgagtaatgatgcgattctggaagcacagatgttgatgcttcaggctcat
aacattctgaaccctgctaatggtgctcctattactgtgcctgcacaggatatggtactt
ggtttgtattatattaccaagttgagaaaaggggctaaaggtgaaggcttgactttctac
ggtccggaagaggctttgattgcttataatgaaggtaaagtggatattcatgctatcgtc
aacgtagtggtgaaggacttggacaaagatggcaaaatcgtagatgtgatgatgaaagaa
acctccgtagggcgtgtgattgtaaatgaaatcgttccggcggaagtggggtacttgaat
accattatttccaaaaagtctttgcgagatatcattagtgatgttatcaaagctgtcggt
gttgcacgtgcttgtgaattcttggatggtattaagaacttaggttactatatggcgttc
aagggtggtctgtcatttaacttgggtgatattattatcccgaaagaaaaagaagaactg
gtaaaacgtggtaatgaggaagtggaacagattatgatgaactataacatgggtttcatt
actgacaatgaacgttataaccaggttatcgatacatggactcacgtgaacagtgacctg
tctgatatactttacaagacgattaagaatgatgaccaaggcttcaattcagtatttatg
atgcttgactccggagcccgtggttctaaagagcagattcgtcagttgtctggtatgcgt
ggtttgatggcgaaaccgcagaaagccggtgctgaaggcgcacagattattgaaaaccct
attctttcaaactttaaagaaggtttgtctgtgttagagtattttatttctacccacggt
gctcgtaaaggtttggcggatactgcgttgaagactgctgatgcgggatacttgacccgc
cgtctggtagacgtgtcgcatgatgtgattatcaatgaagaagactgtggaacacttcgt
ggtttggtttgtacggccttgaagaataacgatgaagttattgctactttgtacgaacgt
attctaggacgtgtttctgtacatgatatcgtccatcctactactggtaaactgattgta
gccggtggagaggagattacagaggatattgcgcaggaaatcgaggattctccgattgaa
agcgttgaaatccgttcggtattaacttgtgaatctaaaaaaggggtatgcgctaagtgt
tatggacgtaacttggcatccagtcgtatggttcagaaaggtgaagcagtcggtgtaatc
gctgcccaatctattggtgagccgggtacacagttgacattgcgtacattccacgccggt
ggtatcgcaggtaatatggctgctaatgcaagcattgtcgccaagaataatgcacgtttg
gaattcgaagaattacgtacggtagatacggttgatgaaatgggtgaggctgtgaaagtg
gtagtcggtcgtttggctgaagtccgctttatcgatgtgaatacaggaattatcctgtca
actcataacgtgccttatggttcaaaattatatgctgcggacggtgatattgttgagaaa
ggaaaactgattgctaagtgggatccgttcaacgctgttattatcacagaggctactggt
aagattgaattcgagagtgtggttgaaaacgtaacttataaggtagagtctgatgaagct
accggtctgcgtgaaattatcattatcgagtctaaggataagacaaaagtaccttctgcc
catattgtaaccgaggatggtaatttgatccgtacttataacttacccgtgggggggcat
gttgtggttgaaaacggtcaggcagtgaaagctggtgacattattgtgaagattcctcgt
gctgtaggcaaggctggtgatatcaccggtggtcttcctcgtgttacagagctgtttgag
gctcgtaatccatctaatcctgctgtcgtttctgaaatagacggtgaaattactatgggt
aagattaagcgtggtaaccgtgaaattattgtcacatctaagacaggtgaagtgaaaaag
tatttggtgaatctgtctaaacaaatattggttcaggagaatgactacgttcgtgccgga
actccgctgtctgacggtgcgattactcctgctgacattttggccattaaaggtcccacg
gctgtacaggaatacatcgtaaatgaagtgcaagacgtttaccgtttgcagggtgtgaag
attaacgacaaacactttgagattattgttcgtcaaatgatgcgtaaggtagaaatcgat
gagccgggcgatactcgcttcttggaacagcaggtagtggataagcaagagtttatggaa
gaaaacgatcgtatttggggcaagaaagtagttgttgacgctggtgattctcagaatttg
cagccgggtcagattgttactgctcgtaagttgcgtgatgagaacagtatgttgaaacgt
cgtgacttgaagcctgttgaggtacgtgatgctattcctgctacatctacccagattttg
caaggtatcacccgtgccgctttgggaacttcgagtttcatgtctgctgcatcattccag
gaaacaacgaaagttttgaatgaagctgctattaatggtaaggttgatagattggaaggt
atgaaggaaaatgtgatttgtggtcacttgattcctgctggtactggtcagcgtgaattc
gaaaagattattgttggttcgaaggaagaatatgaccgtattcttgccaatcgtaagaat
gtactcgattatagtgaggtagagtaa
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