Phocaeicola dorei HS1_L_1_B_010: EL88_24650
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Entry
EL88_24650 CDS
T03262
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bdo
Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EL88_24650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdo03019
]
EL88_24650
03016 Transfer RNA biogenesis [BR:
bdo03016
]
EL88_24650
Enzymes [BR:
bdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EL88_24650
Messenger RNA biogenesis [BR:
bdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EL88_24650
Transfer RNA biogenesis [BR:
bdo03016
]
Prokaryotic type
tRNA degradation factors
EL88_24650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
SAP_new25
Motif
Other DBs
NCBI-ProteinID:
AII66148
UniProt:
A0AA37KHG8
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All DBs
Position
5659530..5661677
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AA seq
715 aa
AA seq
DB search
MAKKKEKKAGKRMKKSEMSERLISLFHTKPNETFSLKQLSSSLNLTTHPLKMLCADIITE
MIEDDFLQEVEKGHYKLNDHGLIMTGVFQRKSNGKNSFIPDDGGETIFIAERNSAHAMNN
DKVKIALFAKRKNRNPEGEVIEILERANDTFVGTLKVEKFYAFLLTENRTLANDIFIPKD
KLKGGKNGDKAVVKIVEWPEEAKNPIGQVIDILGKAGENTTEMHAILAEFGLPYVYPKNV
ETAAEKIPAEISEADYAKREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIAD
VTHYVKEGSVIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNE
KGEVKDSRIVHTIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLAAGAI
DFDRIEVKFEIDETGKPLSVYFKESKEANKLIEEFMLLANRTVAERIGKVPKNKKAKVFP
YRIHDLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSL
RAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAGGRTVQETKYEEL
CDHSSEMEQIAANAERASVKYKQVEFMGERLGMEFDGVISGVTEWGLYVELNENKCEGMV
PMRDLGDDYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANLEKKQLDFALIEK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaagaaagaaaaaaaagcagggaaacgtatgaaaaaaagcgaaatgtctgaa
cgactgataagcttattccacaccaaaccaaacgaaacattcagtctgaaacaattatca
agcagtctgaacctcactacacatccgcttaaaatgctttgtgccgacatcattactgaa
atgattgaggatgattttctgcaagaagtagaaaaaggacactacaaactgaacgaccac
ggcctgattatgactggcgtctttcagcgtaaaagcaacggcaagaactccttcatcccc
gatgatggtggagaaactattttcatagccgaacgtaattcggcacatgccatgaataat
gacaaagtaaaaatagccctctttgccaaacgtaagaatcggaatccggaaggtgaagtg
atagaaattctggaacgtgccaatgatacttttgtcggtacactgaaagtagagaaattc
tacgccttcctgctgaccgagaaccgcaccctggcaaatgatatttttatcccgaaagat
aagctgaaaggtggaaagaatggggacaaagcggttgtgaaaattgtagaatggcccgaa
gaggcaaaaaatccgataggacaagtcattgatatcttgggaaaagcaggagaaaacaca
actgagatgcatgccattttggccgaattcggtttaccttacgtatatcctaagaatgta
gaaaccgctgccgaaaagattccggcagagatttccgaagcggactatgcaaaacgtgaa
gatttccgcaatgtaacaactttcaccattgaccccaaagatgcaaaggactttgatgac
gcgctctccatccgtctcatcaaaccgggactatgggaagtaggcgtgcacattgccgat
gttactcattacgtaaaagaaggaagcgttatcgacaaagaagctgaaaagcgcgctact
tccgtttatctggtagaccgtaccatccccatgttgcccgaacggctgtgtaacttcatc
tgttccctccgccccgacgaagagaaactggcattctccgtcattttcaatatgaatgaa
aagggagaggtgaaagactcgcgcatcgtgcacaccattataaagagcgaccgccgtttc
acctatgaggaggcgcaaaaagtgattgaaacgggtgaaggcgactacaaagaagaaatt
ctggagctgaacaaactggcacaaatcctgcgtaaacaaagattggctgccggtgctatt
gactttgaccgcatagaagtgaaatttgagatagacgaaaccggcaaaccactcagtgtc
tacttcaaagaatccaaagaagccaataagttgatagaagaatttatgttgttggccaac
cgcacggttgccgaaagaatcggtaaagtacctaaaaacaagaaagccaaagtattccct
tatcgtatccacgaccttccggaccccgataaactggagaacttgaattggtttatcaat
cgcttcggatataagatacgtacatcgggtagcaaaacagagatatccaaatccatcaat
cgtttactggacgacataaagaataagaaagaacaaaatctggtggaaaccgtatccttg
cgtgccatgcaaaaggcccgttattccactcataatattggccactatggtctggcattt
gactattatactcactttacctcacctatccgccgttttccggatatgatggttcatcgt
ctgctcacccgctatctggcaggaggacgtacggtacaggaaacgaaatacgaagagttg
tgcgaccatagttctgaaatggaacaaatcgccgccaatgcagaacgtgcttctgtaaaa
tacaaacaagtagagtttatgggtgaacgtttgggcatggagttcgatggagtcatttcc
ggagttaccgaatggggactttatgtggaattgaacgaaaacaagtgcgaaggtatggtt
cccatgcgtgaccttggtgatgattattatgatttcgatgaaaagaactattgtctgacg
gggcgccggcatcacaaaaaattcagtttgggagatccggttaccattaaagtggcccgc
gccaatctggagaaaaagcaacttgatttcgctttgatcgagaaataa
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