Bdellovibrio sp. qaytius: CIK05_03610
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Entry
CIK05_03610 CDS
T05880
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bdq
Bdellovibrio sp. qaytius
Brite
KEGG Orthology (KO) [BR:
bdq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdq03032
]
CIK05_03610 (topA)
03400 DNA repair and recombination proteins [BR:
bdq03400
]
CIK05_03610 (topA)
Enzymes [BR:
bdq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CIK05_03610 (topA)
DNA replication proteins [BR:
bdq03032
]
Prokaryotic type
DNA Topoisomerases
CIK05_03610 (topA)
DNA repair and recombination proteins [BR:
bdq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CIK05_03610 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SPATA24
Motif
Other DBs
NCBI-ProteinID:
AZZ35915
UniProt:
A0A3T0RPD2
LinkDB
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Position
705311..708001
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AA seq
896 aa
AA seq
DB search
MAKKAAASGDIESGIKLVIVESPTKAKTIRKFLGKDYIVESCMGHVRDLPQSSKDIPEKV
KKEKWAQLGVNVDKNFEPLYCIPKDKIKVIKNLKDKLEDADMLFLATDEDREGESISWHL
QEVLKPRVPTKRMVFHEITKEAIQKSLKDTREIDYNLVRAQEARRILDRLVGYTISPLLW
KKVAYGLSAGRVQSVAVKLIVEREKERIRFKKSNYYGLTAYLEKSGEGFEAKLLTVDQKR
VATGKDFDGLTGQLNAGKDLLVLDSKVAQGLASKLQTASWKVTEVEEKPVQRNPYAPFIT
STLQQEANRKLGMSSREAMQVAQKLYEQGFITYMRTDSTSLSQEAIKAAREAIVEKYGKD
YLPAEPRIYSGKKVKGAQEAHECIRPAGTQFQDPDATGLIGPQLKLYDLIWKRTMASQMT
NSRQKQVSAKLSAENTVFNATGTTIEFPGFLRAYVEGSDDPEADLESREVRLPQLKQNDS
VKAEKMEPTAHETKPPARFTEASLVQTMEKEGIGRPSTYASVIGTIVDRGYVRKMGNALV
PTFTAMVVSKLLSKYLTQYVDLGFTSEMESSLDNIADGDLNWEKYLTSVYHGDKGLRATV
ANEEGNINPEEARKIKLEGLDAYEFHVGKFGAYVKTQRGEEFFNASIPDSEAPADVTSES
IEKLIEQKIKGADSLGIDPKTQKKIYVLNGRYGAYVQLGENDDEEIKRSTLPPGMDPTAV
TYEMSLEILALPKSLGLNPGNGKDIKAGVGRFGPYVVCDGDYRSIPKHETVFGMNLEKAL
ALFAIPKKGRGKAAALKEFGKHPAHDVEVSLFNGPYGVYLKAGKTNVGLPEGITADNITK
EKAFELMNEKLAEAAPSSKKKAKGAKKAKKAVKKATAPAEIAEAPAKKKTITKKKK
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaaagctgcagcatcgggtgatatagaatctgggatcaagttagttatcgtt
gagtcaccgacgaaggccaaaacaattcgtaaatttttaggcaaagattatatcgttgaa
tcttgtatgggccacgtgcgcgacttacctcaatcttcaaaagatattcctgaaaaagtt
aaaaaagaaaaatgggcgcagcttggagtgaatgtcgataaaaacttcgaaccactttat
tgcattccaaaagataaaattaaagtaattaaaaatttaaaagataaattagaagatgcg
gacatgttgtttctagcgaccgatgaagatcgcgaaggagaatcaatcagctggcattta
caagaggttttaaaaccgcgtgtgccaactaagcgcatggtgtttcatgagatcactaaa
gaagcgattcaaaaatctttaaaagacacacgtgaaattgattacaacttagttcgtgcg
caagaagcacgtcgtattttagatcgtttagtgggttatacaatttctccgttactttgg
aaaaaagtcgcttacggtttatcagcaggccgcgttcaatcggtggctgtgaaacttatt
gttgagcgtgaaaaagaacgcatccgttttaaaaaatctaattactatggtttaacagct
tatttagaaaaatcgggagaaggttttgaagccaaacttttaacggttgatcaaaagcgc
gttgctacgggtaaagatttcgatggcttaacgggtcagttaaatgcgggaaaagattta
ttagttttagattctaaagtagcacaaggtttagcttcaaaacttcaaacggcttcatgg
aaagtcactgaagttgaagaaaaacctgttcaacgtaatccttatgctccgtttattact
tcgacattacaacaggaagccaatcgtaaattgggtatgagttcgcgtgaagcgatgcaa
gtcgcacagaaactttacgagcaaggttttattacttacatgcgtactgattcaacttca
ctttcacaagaggcgatcaaggccgctcgtgaagcgatcgttgaaaaatatggaaaagat
tatttaccagcagagcctcgtatttacagcggtaaaaaagttaagggtgcgcaagaggcc
catgagtgtattcgtccggcaggaacacagtttcaagatcctgatgcgacgggattaatc
ggcccgcaattaaaactttatgatttaatctggaagcgcacgatggcttcacaaatgacg
aactctcgccaaaaacaagtgtctgcaaaattatctgcagagaacacagtctttaatgcg
acaggaactacaattgagtttccggggttcttacgtgcctacgttgaagggtcggatgat
ccagaagctgatttagaatctcgcgaagtgcgcttaccacagttaaaacaaaatgattct
gtgaaagccgaaaaaatggaaccaacagcccacgaaactaaaccaccagcgcgtttcaca
gaggcctcgctagttcaaacgatggaaaaagaaggcattggccgtccgtcaacttacgcg
agtgttatcggtacgattgtcgatcgtggctatgttcgtaaaatgggaaatgctttagtt
ccaacgttcacagcaatggttgtttcaaaattattatctaaatatttaactcaatatgtg
gatttaggatttacttcagagatggagagttctttagataatatcgcagacggtgattta
aactgggaaaaatatttaaccagtgtctatcacggtgataaaggtcttcgcgccacagtt
gcgaatgaagaaggaaacattaatccagaagaagcgcgtaaaattaaacttgaaggtttg
gatgcttacgaatttcatgtgggtaaattcggtgcttacgttaaaactcaacgtggcgaa
gaattttttaatgcttcgattccggattctgaagctccggcggatgtaacttcagaatcc
attgaaaaattaattgaacaaaaaattaaaggtgctgattcattaggtattgatcctaaa
acgcaaaaaaagatttacgttttaaatggtcgttacggtgcctatgttcaattaggtgag
aacgatgatgaagagatcaaacgttcgacactgcctccgggaatggacccaacggctgtg
acttatgaaatgtctttagaaattttagctttacctaaatcattaggattaaaccctgga
aacggtaaagacatcaaagccggcgttggccgttttggaccttacgtagtttgtgacgga
gattaccgttcaattccaaaacatgaaacagtgtttggaatgaatttagaaaaagctttg
gctctatttgcgattcctaaaaaaggacgcggtaaagcagcggcacttaaagaatttggt
aaacatccagctcatgatgttgaagtgagtttatttaatggaccctatggcgtgtaccta
aaggctgggaaaacaaatgttggcttaccagaaggtataactgctgataacatcactaaa
gagaaagcttttgagctaatgaacgagaagcttgcagaagcagctccgagttcgaaaaag
aaagctaaaggcgcgaaaaaagctaaaaaggccgttaaaaaagccacggcacctgccgaa
atagctgaagcacctgctaaaaagaaaacgattacgaagaagaagaagtaa
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