Bdellovibrio sp. qaytius: CIK05_04990
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Entry
CIK05_04990 CDS
T05880
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bdq
Bdellovibrio sp. qaytius
Pathway
bdq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIK05_04990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdq03019
]
CIK05_04990
03009 Ribosome biogenesis [BR:
bdq03009
]
CIK05_04990
Enzymes [BR:
bdq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIK05_04990
Messenger RNA biogenesis [BR:
bdq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIK05_04990
Ribosome biogenesis [BR:
bdq03009
]
Prokaryotic type
rRNA helicases
CIK05_04990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
NAT10_TcmA_helicase
AAA_22
Cas3-like_C_2
Mistic
Motif
Other DBs
NCBI-ProteinID:
AZZ36175
LinkDB
All DBs
Position
complement(1041658..1043715)
Genome browser
AA seq
685 aa
AA seq
DB search
MEPTSELSVEASKKTVEPIIEMDAQEGTEITTSDFAEFALSAEVHKALEKLKFTKATPVQ
KACIPLLLEKDTDIVALAKTGTGKTAAFGLPVIEKITAGAGLQALVLCPTRELAQQVAAH
IRNFGEFKKIKVTTVVGGESYERQIKNIRANPEVLVSTPGRLVDLMEQKIVDLKDVKYLV
LDEADEMLSFGFEEALETIWKASAKTDLKTWLFSATMSRAIKNLSSKYLKDAEEVTLNTH
QEKSNVESFACVIFEEDKEDALSLLIKNTQDFYGIIFATTKKQVAELELRLRSLGLDVDS
LHGDKVQADRTRTIERMKAKRTKILVATDVAARGLDIQDLTHVVNFEIPWDTETYTHRVG
RTARAGKAGIVWTMVKPKESGKLSRFERALNFKFKGLKIPLVEDVQINMKLNWLKQIAAM
KMHEKDTSKFEKAIDQLEGMADLTSETKQWLAKALNYIGQGEELRMKQPRSLELRERGDS
TGNRSEGNFDDRGGEGRGERRGFGGGGFRGNDRGGFRGGDRGGFRGGDRGGFRGGDRFDR
GPREDRAPRADFNADGDRPAFNNDAPRGDRPERSSGSDRPWGFRGNDRGGFGAGADRPQR
SFDRGPRENRSEDRAPRGDFAPAGDRPQRSFDGEAPRSEGGGDRGFRGGRGGGAGRPGGG
FRGFSGGGSRGGRDGGSRAPSRSRD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggagcctacttcagaattatcagtagaagcttcgaaaaaaacagtagagccaattatt
gaaatggacgcacaagaaggtactgaaatcacaacgagtgatttcgcggaatttgcctta
tctgctgaagttcataaagctctagaaaaacttaaatttacaaaagcaacaccagtgcaa
aaagcctgtattccgcttttgttagaaaaagacactgacatcgtggctttagctaaaaca
ggaactggaaaaacggcagcgttcggtttaccagttatcgaaaaaatcactgcaggagct
ggcttacaagctttagttctttgccctactcgtgagttagctcaacaagtagcagcccac
atccgtaactttggtgaattcaaaaaaatcaaagtaacaacagttgttggtggtgaatct
tacgaacgccaaatcaaaaacatccgcgctaatccagaagttttagtttcaactccaggt
cgcttagttgacttaatggaacaaaaaatcgttgatcttaaagacgtgaaatacttagtt
ttagatgaagctgatgaaatgttatcatttggtttcgaagaagctttagaaacaatctgg
aaagcttctgctaaaacagatttaaaaacatggttgttctcggcaactatgtctcgcgca
atcaaaaatttatcgtctaaatatttaaaagacgctgaagaagtaacgttaaatactcac
caagaaaaatcaaatgttgaatcatttgcttgcgtgatttttgaagaagataaagaagat
gctttatctttattaatcaaaaatactcaagacttctacggaatcattttcgcaacgact
aaaaaacaagttgctgaacttgaattacgcttacgttcattaggcttagatgttgattca
cttcacggtgataaagttcaagctgatcgtactcgtacgattgaacgcatgaaagctaaa
cgcactaaaatcttagtagcaactgacgttgcggctcgtggattagatatccaagattta
actcacgttgtgaatttcgaaatcccttgggatacagaaacatacactcaccgtgttggt
cgtacagctcgtgctggtaaagctggtatcgtatggacaatggttaaacctaaagaatct
ggaaaattatcacgttttgaacgtgcattaaatttcaaattcaaaggtttaaaaattcct
ttagttgaagatgttcaaatcaatatgaaattgaattggttaaaacagatcgcagctatg
aaaatgcatgaaaaagacacttctaaatttgaaaaagctatcgaccaattagaaggtatg
gctgatcttacttctgaaacaaaacagtggttagcaaaagcattaaactacatcggccaa
ggcgaagaacttcgcatgaaacaacctcgttcattagaattacgtgaacgtggcgactca
actggcaaccgttctgaaggaaatttcgatgaccgtggtggtgaaggccgtggcgagcgt
cgtggtttcggcggcggtggattccgcggcaatgatcgcggtggattccgtggtggcgat
cgcggaggtttccgcggtggtgaccgtggtggattccgtggcggcgatcgttttgatcgt
ggtcctcgtgaagatcgcgctcctcgtgcagatttcaatgctgacggtgatcgtccagca
tttaataacgatgctccacgtggtgatcgtccagaacgttcttctggatctgatcgtcca
tggggtttccgtggtaatgaccgcggtggattcggcgctggcgctgatcgtccacaacgt
tcatttgatcgtggtccaagagaaaatcgcagtgaagatcgcgctcctcgtggtgatttc
gctccggctggtgatcgtccacaacgttcattcgatggcgaagcgcctcgttctgaaggt
ggcggagatcgcggtttccgcggtggacgcggtggcggcgcaggtcgtcctggtggcgga
tttcgtggattctctggcggcggatcacgcggtggtcgtgacggtggatcaagagctcct
tcacgttctcgtgactag
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