Bdellovibrio sp. qaytius: CIK05_07015
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Entry
CIK05_07015 CDS
T05880
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdq
Bdellovibrio sp. qaytius
Pathway
bdq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIK05_07015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdq03019
]
CIK05_07015
Enzymes [BR:
bdq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIK05_07015
Messenger RNA biogenesis [BR:
bdq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIK05_07015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
ERCC3_RAD25_C
EPSP_synthase
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
AZZ36548
LinkDB
All DBs
Position
1458849..1460243
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AA seq
464 aa
AA seq
DB search
MQKPQDSKAPVATAPSATVATSTKLFSDLNLIEPLQRALRDLNYERPTPIQEQSIPILLA
KKDLLGCAQTGTGKTAAFALPLLQNLAKSKEAAGRRQALVLVLAPTRELALQIHQSFEDY
GRYLEIKTAVIFGGVGQGPQVKALFNGVDVLVATPGRLFDLLQQKHVYLDKVQTFVLDEA
DRMMDMGFITDIQKILKILPKERHNLFFSATMPPDIAKLANNILVNPQRVEITPAATTAE
KIEQWLMYVDKAAKKDLLRHLLEDKALKRVIVFTRTKHGANKVAEVLLKNKITSAAIHGN
KSQGARVRALEDFRSGHCRVLIATDIAARGIDVDDITHVINFEIPNVAENYVHRIGRTAR
AGREGIAISFCDAEEKSFIRDIEKATGKAIPVVTQQPYHSKAVELAQLMSPGKAKAKIEG
GNRGGNRNRRGGGGGQRRSGSGGGGGNGGSRSGFRGNSGSPNRA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacctcaagattcaaaagctccggtagctacagcgccctctgcaacagtagcc
acttcaactaaactattttctgatttaaatctaattgagccgcttcaacgcgcgcttcgt
gaccttaactacgaaagacctactccaatccaagaacaatcgatccctattcttttagct
aaaaaagatctacttggttgtgctcaaacgggaactggtaaaactgcagcgttcgcattg
ccattattacaaaacttagcaaaatctaaagaggccgctggccgcagacaagctttggtt
ttagtgttagctccaacgcgtgaattagctcttcaaattcaccaaagttttgaagactac
ggcagatacttagaaatcaaaacggctgtgatctttggtggtgttggacaaggccctcaa
gttaaagccttatttaacggtgttgatgtgcttgtggcgactccgggtcgtttattcgat
ctattacagcaaaagcatgtgtacttagataaagttcaaacattcgtgttagatgaagcg
gatcgtatgatggatatgggttttattactgatattcaaaaaattcttaaaattttacct
aaagaacgtcacaatttatttttctcggcaacaatgccacctgatatcgctaagcttgct
aataacatcttagtaaatccacaacgcgttgaaatcacgccagctgcaacaacggctgaa
aaaattgaacagtggttaatgtacgttgataaagcggcgaaaaaagatttattaagacat
ttattagaagataaagctttgaagcgcgttatcgttttcacgcgcactaaacatggcgcg
aacaaagtcgctgaagttttattaaaaaacaaaatcacttctgcagcaatacatggaaat
aaatctcaaggcgctcgtgttagagctttagaagatttcagatctggtcattgccgtgta
cttatcgcaactgatatcgcagctcgcggtattgacgttgatgatatcactcacgttatt
aactttgaaattccaaatgtagcagaaaattacgttcaccgtatcggtcgtacagctcgt
gcgggtcgtgaaggtatcgcgatttcattctgtgatgctgaagaaaaatcatttatccgt
gatatcgaaaaagccacgggtaaagcgattccagttgtgactcaacaaccttaccattct
aaagctgtagagcttgcgcaattgatgtctccgggtaaagcgaaagctaaaatcgaaggc
ggaaaccgcggtggaaatcgtaatcgtcgtggtggcggaggcggtcaacgtcgttcaggt
tctggcggtggtggcggtaacggtggttcacgcagcggttttcgtggcaattcgggtagc
ccaaatagggcttaa
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