Bdellovibrio sp. qaytius: CIK05_15910
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Entry
CIK05_15910 CDS
T05880
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdq
Bdellovibrio sp. qaytius
Pathway
bdq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIK05_15910 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdq03400
]
CIK05_15910 (mfd)
Enzymes [BR:
bdq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIK05_15910 (mfd)
DNA repair and recombination proteins [BR:
bdq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIK05_15910 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
T1R_D3-like
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZZ38220
UniProt:
A0A3T0RWK7
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All DBs
Position
3326153..3329686
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AA seq
1177 aa
AA seq
DB search
MNNHYSLRLEEIILRAANKKKELFNVVGSQSSAAISFLLSQHFSIHFNGLPTLVVVSSLD
DAELFAKQISFFSNEFRCHILKHFDVQPYSGLYPSPSASWDRSKFLYWANQPNAEKNNIF
IAPISALQQKSAPFNNFSKRCRAIKSGDELPTNLAEYFHDLGYQPAPVVEDRGQYSIRGG
IVDIFSVAEEKPIRIELFGDQVETLRYFSNVSQLSEEETRVLNLAPVFEYELDDDNLESV
VKKFRKQLEGRPVPHAERDELLRELTQKTLFPGAEYLLPYSYDSLVSPLEHFSSGLNVIV
VDPVEVARRADEYYQEVVADYRAAETTLFKPETDELYFSFDKVVYPEGSQTFQFSNLAFL
TEESFTEERIEYRSSPLTEFTQLAYNKTPGSTEWISVAAPKLQLWRKEKYKIFISFKNHT
QLDRLKNLLDRLEVAFEVAPSSGAASYDWDKWLGFLDQPNQPVVLVPRDLGETVLLHEEQ
IIFLRADDFFGRKQRAAAQSSYEEFSKNAKRLSFGDLKPNDLVVHVKHGIGIYEGLKIMN
VGGIDSEFIQVAYKDKDKLYLPVYRVGQLQKFSGAAQTTVLDKLGGVGWEKTTSKVKKHL
RDIAAELLQLYAKRAEITRFPLVLDEVLYGKFERSFPYDETNDQLRAIHEIQKDFHSDHP
MDRLVCGDVGFGKTEVSMRAAFQAVANKKQVAVLAPTTVLTFQHLETFKKRFAGFNYEIR
SLNRFVSPADQKKTLAEVKDGKVDILIGTHRIFSKDVVFKDLGLLIIDEEQKFGVLHKEK
IKKLKTNVDTLTLSATPIPRTLNMSFTGVRDLSIINTPPVDRLPTRTFVSKFDTELIRKG
ITAEIARGGQVYFIHNRVQSIYGIADELRQIVPDARMKVAHGQMGEEDLEASMLAFFNHE
IDVLICTSIVESGMDVPRANTMFIDQAHMFGLSQLYQLRGRVGRSKSRAYCYLLMPKDKR
IEKDAQERLKIIQDNSALGSGIKIAQYDLELRGAGNILGDDQSGHVNSVGYEMYMDLLNE
ALAEAKGENTPDAELDPEINLRIPALIPDNYIKDIRIRLSYYKALADIKSQEDLDQIEAE
LKDQFGDLPDPVVNLMGLMLIRRQCKNLGVRDISAGLKNVSLIFTEQTKLKPQTAIQLAM
RENKKYSITPDQRLNVRMNAITWSAVYEELQYLLSLV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgaataatcattattcgttgcgattagaagaaattattcttcgcgcagccaacaaaaag
aaagagttatttaacgttgtcggctcacagtcgtctgcggctatttcttttttattgtca
cagcatttttctatacatttcaatggcttgccgacacttgtcgtagtttcaagtttagac
gacgcagaactttttgctaagcaaataagctttttttccaatgaatttcgctgtcatatt
ctaaaacatttcgatgttcagccatattcgggattatacccatcaccttctgcatcttgg
gatcgttcaaaatttttgtattgggctaatcaaccaaacgctgaaaaaaacaacatattt
atcgctccgatttcggcgcttcaacaaaagtcagcacccttcaataacttcagcaaacgt
tgccgtgctattaaatctggcgacgagttgccaacaaacttggctgagtactttcatgat
ctaggctaccaacctgccccggttgttgaagatcgcgggcaatacagtattcgcggcggc
atcgttgatattttttcagtggctgaagaaaaaccaattcgtatcgaactttttggcgat
caagttgaaacacttcgttatttttcaaacgtttcacaattaagcgaagaagaaacgcgc
gttttaaatttagcccctgtttttgaatacgaacttgatgatgataatttagaatctgtc
gttaaaaagtttcgcaaacaattagaaggccgcccagttccgcatgccgagcgcgacgaa
ttattacgtgagctgacgcaaaaaactttatttccaggggctgagtatttacttccgtat
agttatgattcgttagtctcaccgttagaacatttttcttctggattaaacgtgatcgtt
gttgaccctgtcgaggtcgcaagacgcgctgatgaatactatcaagaagttgtggctgac
tatcgtgcagctgaaactactttatttaaacctgaaacagatgaactgtatttttctttc
gataaagtcgtgtatcccgaaggttcgcaaacatttcagttttctaatttagctttttta
actgaagaatctttcaccgaagagcgcattgaatacagatcaagcccgctcactgaattt
actcagcttgcttacaacaaaacacctggctcgacagagtggatttctgtagccgcacca
aaactgcaactttggcgcaaagaaaaatacaaaatatttatttcatttaaaaatcatacg
cagctagatcgtctaaaaaacttgttagaccgccttgaggtggcttttgaagtcgcccca
agttcgggtgctgctagttatgattgggataaatggttaggttttttagatcaacccaat
caacccgtagtcttagttccgcgcgatcttggcgaaacagttttacttcacgaagaacaa
attattttcttacgcgctgatgattttttcggtcgtaaacaacgggctgccgcgcaaagc
tcttacgaagagttttctaaaaatgctaaacgcttaagtttcggcgatttaaaacctaac
gatctcgttgtgcacgtaaagcacggcattggtatttacgaaggtttaaaaatcatgaat
gtgggcggaattgattctgaatttattcaggtcgcctacaaagataaagataaactttat
ttacctgtgtatcgtgttggccaattacaaaaattttctggagctgcgcaaactacagtc
ttagataaattaggcggcgttggttgggagaaaacaaccagcaaagttaaaaaacattta
cgcgatattgccgctgaattattacagctttacgctaaacgcgccgagatcacacgcttt
ccattggttttagacgaagttctttatggaaaatttgaaagatcttttccgtacgatgaa
acaaacgatcagttacgcgctattcatgaaattcaaaaagattttcacagcgatcaccca
atggatcgtttagtttgcggtgatgtgggttttggtaaaaccgaagtttctatgcgcgca
gcctttcaagcggtcgcaaataaaaaacaagtcgctgtgcttgcgccgacaacagtttta
acttttcaacatttagagacctttaaaaaacgttttgctggctttaattacgaaatcaga
tcattaaaccgatttgtttcgcctgctgatcaaaagaaaactttagccgaagttaaagat
ggtaaagttgatattctcattggtacacatcgtatatttagtaaagatgtcgtttttaaa
gatttgggtttattaatcatcgatgaagaacaaaaattcggcgtacttcataaagagaag
attaagaaattaaaaactaacgttgatacattaacgttatcagccacaccaatcccaaga
actttaaacatgagttttaccggagtgcgagatttatctattattaatacgccaccagta
gatcgcttgccgaccagaactttcgtttcaaaatttgatactgaattaattcgcaaaggt
atcacggcagaaattgcgcgtggcgggcaagtttattttattcataaccgcgttcaatct
atttatggtattgccgacgagctcagacaaatcgtacctgatgcgcgcatgaaggtggcc
catggtcaaatgggcgaagaagatcttgaagcttcaatgctggctttctttaatcatgaa
attgatgttttaatttgtacttcaatcgttgaatcaggaatggatgttccacgcgctaac
acgatgttcatcgatcaagcgcatatgttcgggttatcacagctttatcaattacgcggc
cgcgttggtcgaagcaaatcacgcgcgtactgttatttattaatgccaaaagataaacgc
atcgaaaaagatgcgcaagaacgtcttaaaattattcaggataattcagctttaggttct
ggaattaaaattgcgcaatacgatttagaattgcgtggtgctggtaatattttgggtgat
gatcaatcgggtcacgtaaactctgtcggctatgaaatgtacatggatctgttaaatgaa
gctctcgcagaggctaaaggtgaaaacactccagatgccgaacttgatccagaaattaat
ttacgtattcctgcgctgattcccgataactacattaaagatattcgtatacgtttaagt
tattacaaagccttagcagatattaaatcacaagaagacttagaccagatcgaagctgaa
ttaaaagatcagttcggcgatttgccagatcccgtggtgaacttaatgggtctaatgtta
attcgtcgccaatgtaaaaacctaggtgtgcgtgatatcagcgctggtctaaaaaatgtt
tcgttaatttttacagaacaaacaaaactaaaaccgcaaacagctattcagctagcgatg
cgtgaaaataaaaaatactcaatcacgccagatcagcgcttaaatgtgcgcatgaacgcg
atcacatggtctgcagtgtatgaagaattacagtatttattaagcttggtttga
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