Bactrocera dorsalis (oriental fruit fly): 105222218
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Entry
105222218 CDS
T09719
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bdr
Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105222218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdr03019
]
105222218
03041 Spliceosome [BR:
bdr03041
]
105222218
Messenger RNA biogenesis [BR:
bdr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105222218
Spliceosome [BR:
bdr03041
]
Complex B
Other components
Prp19-related factors
105222218
Complex C
105222218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_12
TPR_15
TPR_8
ARM_TT21_C
ARM_TT21
PPR
TPR_10
Motif
Other DBs
NCBI-GeneID:
105222218
NCBI-ProteinID:
XP_011197746
UniProt:
A0A6I9V4Y6
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Position
3:20337654..20340785
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AA seq
881 aa
AA seq
DB search
MTLIDKPLITVDIDFPEEDVPYEEEILRNAYSVKHWLRYIEHKSKAPNCGVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGRPLNDPMYDEVNNTFERALVFMHKMPRIWMDYGVFMTT
QCRITRTRHVFDRALRALPITQHHRIWPLYLKFVRRFDIPETALRIYRRYLKLFPEDAEE
YIEYLIDVERLDEAAQQLASVVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDA
IIRSGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EEVSLNKRMEMVANDPHATEEDDIDVELRLARFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEGKPHEIINTYTEAVQTVQPKLAAGKLHTLWVEFAKFYESNNKVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMEIRQENFEGALRLMQKATAMPKRKVAYHDDTETVQMRLY
RSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNSYLTKFLKRYGGTKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEEHGLARHAMAVYDRATSAVKPEEMFDMYNIFIKKAAEIYGLPRTREIYEKAIEALPE
ENMRPMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFLHQPTAGGANAEGGGDAMRLLEAKAAAEQQARQQQT
LKPQTSSNIMFVRGETQGGNAKDKVVNPDEIDIGDSDEDEDEDGDEKAEGAANGTQKRGG
NEENVISAKRLRIEQQAIPAKVFGSLKKPTDDDDDNEQEAD
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgactcttattgataaaccactgattacagtggatatcgattttcccgaggaggatgtt
ccctacgaggaagagattttgcgaaatgcttattcggtgaaacattggcttcgttacatt
gaacataaatccaaggcgcccaattgtggcgtgaatatcgtatatgagcgtgcactcaag
gagctgccgggtagctacaaaatttggtataattatttacgtacacgtcgtaagcaagtg
cgtggacgcccacttaatgatccaatgtatgatgaagtgaataatactttcgaaagagcg
ctggtgttcatgcacaaaatgcctcgcatttggatggattatggcgtttttatgacgacg
cagtgtcgcattacacgtacaaggcacgtgtttgatcgcgctttacgtgcgctgcccatt
acgcagcatcatcgcatttggccgctttatttgaaatttgtgcgacgtttcgatatacca
gaaacagcattacgcatctatcggcgctacttgaaactatttccggaagatgctgaagag
tatatagagtatttgattgatgtcgaacgtttagatgaagcagcacagcaattggcttca
gtggtggacaatgagcatttcgtgtcgaagcatggcaagtctaatcatcagttgtggaat
gagctgtgcgatttgatttcgaaaaatccccacaaagtgcattcattgaatgtagacgct
attatacgcagcgggctccgacgttacactgatcagctcggccatctctggaactcttta
gctgattactatgtgcgttcgggtctcttcgatcgcgcacgcgatatttatgaggaagca
atacaaaccgtgaccactgtacgcgatttcacgcaagtgttcgacgagtatgctcaattc
gaggaagtgtctttgaataaacgcatggaaatggtggcgaacgatccacacgccaccgaa
gaggacgatatcgatgttgaattgcgcttggcacgcttcgaatatctcatggagcgacgt
ctgctgctattgaatagcgtgctactgcgtcagaatccacacaacgtgcatgagtggcac
aagcgtgtaaagttatacgaaggcaagcctcacgaaataatcaatacatacaccgaagcc
gtgcagacagtgcaaccaaagttggcggcgggaaaactccacacattatgggtggaattc
gctaaattttacgaatccaataataaagtggaggacgcgcgtgtggtcttcgagcgtggc
actgaggtggagtatgtgaaagtggaagatctagcggctgtgtggtgcgaatgggccgaa
atggagatcagacaggagaactttgagggcgctctacgtttgatgcaaaaagccaccgca
atgccgaaacgtaaagtggcctatcatgacgataccgagactgtgcaaatgcgtttatat
cgctcgctgaaggtgtggtccatgtacgccgatttggaggaatcttttggcactttcaaa
acatgcaaagctgtatacgatcgcataatcgacttgaaaatctgcacaccgcaaattatc
atcaactacgggctcttcttggaggagcacaactacttcgaggaagcttttcgcgcctat
gagaagggcattgcgctcttcaaatggccgaatgtctatgatatatggaattcttacttg
acaaagtttctcaagcgttatggcggtacaaaattggaacgtgcgcgcgatcttttcgaa
cagtgtctggagaattgtccgcctgagcatgccaagtacttctatctgttgtatgcgaag
ttagaggaggaacacggtttggcgcgtcacgctatggccgtctatgatcgcgcaaccagc
gccgtcaagcccgaagaaatgttcgacatgtacaacatattcataaagaaagccgccgag
atctatgggctgccgcgtacgcgtgaaatttatgaaaaggccatcgaggcattgcccgag
gagaatatgcggccgatgtgtgtgcgctttgcggagatggaaacgaagctgggcgagatt
gaccgcgcacgcgccatttatgcacattgctcacaggtatgtgatccgcgcataaccgcc
gacttttggcaaacctggaaagagtttgaggtgcgtcatggcaatgaggacactatgcgc
gaaatgttgcgcattaagcgctccgtgcaggccacctacaacacgcaagtgaacatgatg
gccgcacagtttctccatcaacctactgccggtggcgccaacgccgagggcggtggcgat
gctatgcgtctgctcgaggctaaggctgcggcagagcagcaagcacgccaacagcaaacg
cttaagccgcaaaccagcagcaatattatgtttgtacgcggcgagacgcaaggtggcaac
gccaaggacaaggtggtgaatccggatgaaatcgacattggcgatagcgatgaggacgaa
gacgaagacggcgacgagaaggctgagggcgctgcaaatggcacacaaaagcgtggcggc
aatgaggagaacgtcatttcggcgaagcgcttgcgcatcgaacaacaagccataccggcg
aaggtgtttggcagcttgaaaaagcccaccgacgatgatgatgataacgaacaggaagca
gattga
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