Bactrocera dorsalis (oriental fruit fly): 105225488
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Entry
105225488 CDS
T09719
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bdr
Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03013
Nucleocytoplasmic transport
bdr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105225488
03015 mRNA surveillance pathway
105225488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdr03019
]
105225488
Enzymes [BR:
bdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105225488
5.6.2.5 RNA 5'-3' helicase
105225488
Messenger RNA biogenesis [BR:
bdr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105225488
mRNA cycle factors
Common to processing body (P body) and stress granule
105225488
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NAT10_TcmA_helicase
DEAD
UvrD-helicase
AAA_22
NPHP3_N
ATPase
nSTAND_NTPase5
AAA_16
SRP54
nSTAND3
AAA_10
Motif
Other DBs
NCBI-GeneID:
105225488
NCBI-ProteinID:
XP_011202271
UniProt:
A0A6I9UW95
LinkDB
All DBs
Position
4
Genome browser
AA seq
1214 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEENDLIGADTQASEFDFRDFTLPSQSQTQASQLECIGGNATQ
SKLNVLTNNLAELQFEEEDDDTSILAVKELPNHACKYCGIHDPGTVVMCNNCKKWFCNGR
GSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFIPAKADSVVVLL
CRQPCAAQNSLKDMNWDQDQWKPLITDRSFLPWLVKVPTEQEQLRARQISAAQINKLEEL
WKENIDATFQDLEKPGIDTEPSQVLLRYEDGYQYEKVFGPLVRLEAEYDKKLKESQTQEG
IEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWSEIGHVIKVPDNYG
EDVGLELKSSAGAPVKCTSNFAVDFIWKCTSFDRMTRALKVFAMDRSSVSNYIYARLLGH
GRHDGSDELLFRGPIPKLFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT
IVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRLCAKSREAIDSPVSFLALHNQ
IRNMETNIELKKLQQLKDETGELSSADEKRYRTLKRAAEHQLLEAADVICCTCVSAGDVR
LARIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSL
FERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKIDFPWPQPDRP
MFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIITPYEGQRAYLVQ
YMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTR
SKYGTIIVGNPKVLSKQPLWNHLLNFYKDRKVLVEGSLNNLKESLIQFQKPKKIVNTLNM
GAHFMTTMMADAKEAMIPGSIYDRSGQYGYSSGPMNASNYGSSGLGLGLGYGGSNNLGYG
SGAAAAQMQAAAAQNLNNFMSGNFGAIGARNSGPSGTANQAAANAHQWNHHHDSISYISP
ERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQAIQAAAKQGRRTGAGLGATGIAVNNNG
SGNGVSKLFNNFNSSLTGVANKNQNVKSRNTMQAPITTPSTTTSATDIASVLIGAGSTAS
QNNALPLTQQNMSQQMSQPGGFTLSQQPELSQDFGQISQIDSILSQDVNFTAGNLTTDRM
KFGLNSQSQFSQPY
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacgcgtatgggcctagttcgcagactttgacatttttggatacagaggag
aatgacttgattggcgctgatacgcaggcatcagaatttgattttcgcgacttcacgctc
ccttctcaatctcaaacacaagcttcccaattggagtgtattggtggtaatgcaacacag
agcaaattgaatgtactaacaaacaatttggccgagttgcaatttgaggaggaggatgat
gatacatctatattagcggtgaaagaacttcctaatcatgcctgcaagtattgtggcatt
cacgaccctggcacagtagttatgtgtaataactgtaaaaaatggttttgcaatggaagg
ggtagcacatccggatcgcatatagttaatcatttagtgcgagccaagcatcgagaagtg
actcttcattccgaaggtcctcttggggaaactgtactcgagtgttattcatgtggggtt
cgtaatgtttttgttttaggatttatccctgcaaaagcggattcagtagtggtgctattg
tgtcgtcaaccatgtgctgcacaaaattctttgaaagatatgaattgggatcaagatcaa
tggaaacctttgataaccgatcgatctttcttaccatggttagtaaaggtacccaccgag
caagaacaattacgcgctcgtcagatctctgctgctcagataaataaattggaagaattg
tggaaagagaatattgatgcaacgtttcaagatcttgagaaacccggaattgatacggaa
ccatctcaagtgcttcttcgatatgaagatggctaccaatatgaaaaagttttcggacct
ttggtacgattagaagcggaatatgataagaaattgaaagaatcccaaacacaagagggc
atagaagtgcgctgggatgttggcttgaacaaaaaaaccatcgcctattttaccttggcg
aaaactgattctgatatgaaactaatgcatggtgatgaattaaggttgcgttatgttgga
gagcttcataagccatggagcgaaatcggtcacgttataaaagtgcctgacaattatggc
gaagatgtcggattggagctaaagtcctcagcaggtgcaccagttaagtgtacctctaac
tttgccgttgattttatttggaaatgcacttcatttgatcgaatgacacgcgcacttaaa
gtgtttgccatggatcgcagttcagtgtctaattacatatatgctcgtcttcttggacat
ggcagacatgatggcagtgatgaactcttatttcgtggtcccataccaaaactttttagt
gccccgaatttaccggatttgaatcgttcccaagtttatgctgtaaaacacgcattgcaa
cgaccattaagtttaattcaaggtccaccgggtacaggaaaaaccgtcacctcggccaca
atagtttatcaattagtgaaacagcatggaggcaccgtacttgtatgtgcaccgagcaac
acagcagtagaccaacttacagaaaaaatccaccgcacaaacttgaaagtagtacgcctc
tgcgctaaatctcgagaagcaatcgatagtcctgtcagcttcctagctttacataatcaa
attcgtaatatggaaaccaatatagagttaaagaagttgcaacaactcaaagatgagacc
ggtgaattgagctctgctgatgaaaaacgataccgtaccctgaaacgcgccgctgaacat
caattactcgaagctgctgatgttatttgttgtacctgcgtaagcgccggtgacgtgcgt
ctagcacgtataaaattcacttctatcctcatagatgaatccatgcagtccactgagcca
gaatgcatggtaccagttgttttgggagcgaaacagttgatacttgttggagatcactgc
cagttgggaccagttgtaatgtgcaagaaagcagccagagctggtctgtcgcagagcttg
ttcgaacgtctagtagttctgggtatccgcccttttcgactggaagtccagtatcgaatg
catccagaattgtcgcaattcccctcaaacttcttttatgaaggctcgctgcagaacggt
gtttgtgctgaagatcgcaaactaaagattgattttccgtggccacaacctgataggccg
atgtttttccttgttacccaaggtcaagaagaaattgctggctctggaacatcctatctg
aatcgtactgaagcagcaaatgtggagaaaataactacaagatttctcaaggctggcgtc
aagccagagcaaattggtataattaccccgtacgagggccaacgagcttacttagttcaa
tacatgcaatatcaaggaagcttgcactccagactatatcaggaaattgagattgctagc
gtggatgctttccagggcagagagaaagatattataataatgtcatgtgtgcgatctaat
gagcgtcaaggtatcggtttcctcaatgatccccggcgtttgaatgtcgcattaactcgc
tcaaaatatggcactatcattgtgggcaatcctaaagttttgtccaagcaaccgctttgg
aatcatttacttaatttctacaaagatcgcaaagtcttggtcgagggctcattgaacaat
ctaaaggagtccctaatacaatttcaaaagcccaaaaagattgtcaataccctaaatatg
ggcgcccactttatgaccacaatgatggctgatgctaaggaagccatgattcccggctcc
atctacgatcgatccgggcagtatggttattcatcggggcctatgaatgcgtcaaactat
ggtagtagtggtctaggattaggattgggttatggcggtagcaacaacttaggttacggt
agcggcgcagcagctgcacaaatgcaagcagctgcagctcagaatttgaacaattttatg
agcggcaattttggcgctatcggagcccggaacagcggtccaagtggaacggcaaatcaa
gcagctgctaatgcgcaccaatggaaccatcaccacgattcgatcagctacatttcacca
gaacgagcccaagcagcaatgaataacatgccagtgccggttggtatgttcatgaacatg
agtaatattcctccgcgcttctacaaccaacaccaacaggcgatacaggccgcagctaaa
caaggccgccgaactggtgccggcctgggagctaccggtattgctgtaaacaacaacggc
agcggcaatggagtcagcaaactatttaataatttcaattcttctctcactggtgttgct
aataaaaatcaaaatgttaaaagtcgtaacaccatgcaagctcctattactacaccgtca
acaacaactagcgccaccgacatcgctagtgttctcattggggctggttctaccgcgtcc
cagaacaatgccctgccgctcacccaacagaacatgtcacaacagatgagtcaaccgggg
ggctttacattgtcacaacagcccgagctgtcacaggattttggacaaatttcgcaaata
gatagcattctttcccaagatgtaaattttaccgcgggcaatctcaccactgataggatg
aaattcggcctgaatagtcagagtcaattctcgcagccttattga
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integrated database retrieval system
