Bactrocera dorsalis (oriental fruit fly): 105227184
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Entry
105227184 CDS
T09719
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
bdr
Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105227184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdr03400
]
105227184
DNA repair and recombination proteins [BR:
bdr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105227184
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
105227184
NCBI-ProteinID:
XP_011204708
UniProt:
A0A034VS29
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Position
5:70469277..70473706
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AA seq
1187 aa
AA seq
DB search
MSKKLNKSGSAGTPNNNLFKYFSRSPRTPNSIPKTPSEEETKKSAAKAEKENLQAGHGNE
DNGPLAKRKLDVEANQSKSDTMDVDEDDESITIKRPSYKRHRIILSDDEEEIKINKNGSE
KNNSGDDYKPSDEDNAYSSEDADSPPKARSKKTDEPTQKKLKLEKSSFMEKLASLQASAT
ISDAKATAKNDAKYEKIVCTTSTLDEPVVWPHQKLDFLQPDKIKDKNGRRPDHPDYDPTT
LHVPEKYLNSLSPGVRQWWVLKSDNYDCVLFFKVGKFYELYHMDAEVGVQELGFVYMRGE
FAHSGSPEVSFDKMSSILIDRGYKVARVEQTETTEMMSERCKKTKPTKFDKVVRREICQI
SNRGTQVFGTQCQITPHYQPNYMLAVVEKNEVSSSKYGICYVDTSIGDFYVGEFEDDKNG
SRLLTLLSHHMPVLLIFERGSVSERTQEIFRTMLSGILKDPLPANGSKVCSAEKTLKYLA
ENYFAKFSEDSTSADLWPLALRTMQSETDHLGLTPRDGCKLALKALGQCILYLQRCQLEE
KVLPMARYHLYTPPDMLNESVLDSKAKTVQQKTARRRHMVIDATTLANLRITGEEYSLQS
TLDNCCTKFGKRLLHHWICSPSCELDVIVERQQAITELIEHNMELQDLRALLAPMPDFER
HLAQIHLFGNKRISQDHPDGRAILFEEKLYNKKKIQNFIGILKGFTALMELPTLFNDFET
PLMKRLTQFQPAGGFPDMAKELEFFKNAFDHEAGAQTGVIAPEQGVDADYDEALAKIKKI
NDNFKEYLIEQEKFFGCRLTPGGEKNRFQLEVPENAARKAGKAYQLEGQRKGNKPVRRFS
TNETRSLLKELQHAETERDVILKDLSRRIFEKFSKHYELWKQCVDCVANLDVLASLAEYA
RAQQVICVPELHEQSAEKQPFIDIAEGYHPCAAADTFIPNGLMLGTGETPAPLSILTGPN
MGGKSTLMRQVGLLVVMAQIGAHVPAEHCRISLVDRIFTRLGAQDDIMAGQSTFLVELNE
TSLILKHATVNSLVLLDELGRGTATYDGTAIAASVVNYLADLKCRTLFSTHYHNLIEYFH
KDERITLGHMACMVENEDTEDPTQETVTFLYKYSAGACPKSYGFNAAKLAGMPQPIIKRA
YELSKRVEAIALKRKVLSKVVAGAGGNRCNDLKEIKNLLLQLKACHV
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaaattgaataaaagtggtagtgccggtactcctaacaataatctcttcaag
tacttttcacgttcaccacgaacgccaaacagtatacccaaaacacccagtgaagaagaa
accaaaaaatctgcagcaaaagcggaaaaggagaacttacaagctgggcatgggaatgaa
gataatgggcctctagctaaacgaaagttagatgttgaagctaatcagagtaaaagtgat
accatggatgttgatgaggatgatgaaagtattacaattaaacgcccgtcctataaaagg
catcgcataatattgtccgatgatgaagaggaaatcaaaattaataaaaacggaagtgag
aagaataatagtggcgatgactataagccaagtgacgaggataacgcatatagtagtgaa
gacgctgattcgccaccaaaagctcgttccaagaaaactgatgaaccgacgcaaaagaaa
cttaaactggaaaagagtagtttcatggaaaagcttgcttctttgcaagcctcagcaact
atctcagatgctaaagcgactgctaaaaatgatgcaaaatatgaaaaaattgtatgcaca
acgtccacattggacgaaccggtagtgtggccacatcaaaagcttgactttttgcaacca
gataagataaaagataagaatggcagacgccctgaccatccggactatgatcccacgaca
ttacatgtaccagaaaaatacttgaactccttatcacctggtgtacgccaatggtgggtc
ttgaagtctgataactatgattgtgtgctcttttttaaagttggcaaattctatgaatta
tatcatatggatgcggaagttggtgtccaagagctcggtttcgtttatatgcgtggggaa
ttcgcacattcgggttcgccggaagtaagcttcgacaaaatgtctagtatacttattgac
cgcggctataaagtggcacgtgtggaacaaactgaaacaaccgaaatgatgagcgagcgt
tgcaaaaagaccaaaccgacgaaattcgataaagtggtgcgccgcgaaatctgtcagata
tccaatcgaggtacacaagtatttgggacgcaatgtcagataacaccacattatcagcca
aattacatgttggctgtagtcgagaagaatgaggtcagctccagtaaatacggcatttgt
tatgtagacacctcaataggcgacttttatgttggcgaatttgaagatgacaaaaacggt
tcccggctattaactttgctctcccatcatatgccggttttgttaatttttgagcgtggg
tctgtttctgagcgtacacaggaaatattccgtactatgctctccggcatactcaaagat
ccattacctgccaatggctccaaagtatgcagcgctgaaaagacactaaagtatcttgct
gagaattattttgccaaattttcagaagactcaactagtgcagacctttggccattagcg
ttgcgtacaatgcaatccgaaactgatcacttgggtttaacgccgcgtgatggctgcaaa
ctagccctaaaagcgcttggtcaatgcatattatatttgcaacgttgtcaacttgaagaa
aaggtgctgccaatggcacgctatcatctctacacaccaccagatatgttaaatgaatcg
gtattggattcaaaggcaaaaacagtgcagcaaaaaaccgctcggcgccgccatatggtc
atcgatgccaccacacttgctaatctacgcattactggcgaagagtattcgctgcaatcc
acactagataattgctgcacgaaatttggcaaacgtttgctgcatcattggatatgctcg
ccgagctgtgagttggacgtgattgttgaacggcagcaggcgataaccgaactaatagag
cacaacatggagttgcaagatttacgcgctttgctggcgccaatgcctgatttcgaaaga
catctggcgcaaatacatttattcggcaataagcgcatttcgcaagatcatccggacgga
cgtgctatactcttcgaagaaaaattatataataagaagaaaatacaaaactttattggc
atattgaagggatttacagcgctcatggaactgcccacgcttttcaacgactttgaaacg
ccacttatgaaacgattgacgcagtttcagccagctggcggcttccctgacatggctaaa
gaattggagtttttcaagaatgctttcgatcacgaagccggtgcgcagaccggcgttatt
gcacctgaacaaggcgtggacgcagattacgatgaggcattggcgaagattaaaaaaata
aacgacaacttcaaggaatatctgattgaacaagagaagttctttggctgtcgtttgaca
ccaggtggcgagaagaatcgcttccagcttgaggtgccagaaaatgcggctaggaaggcg
ggcaaagcctaccaattggagggtcagcgcaaaggtaacaagcccgtgagacgcttctca
acgaatgaaacacgttcactactaaaggaattgcaacatgccgaaaccgaacgtgatgtc
atactcaaagatttatcacgtcgtatctttgaaaaattctccaaacactatgagctttgg
aagcaatgcgttgattgtgtagccaaccttgatgttttagcctcgttggcagagtatgca
cgtgcacagcaagtcatctgtgtgcctgagctacacgagcaaagtgccgaaaagcaacca
ttcatagacattgcagagggctatcatccatgcgccgctgcggacacattcataccgaat
ggcctcatgctaggcaccggtgagacaccagcaccgctctccatactaacaggccccaat
atgggtggtaaaagtacgcttatgcggcaggtgggcttgttggtagtgatggcgcaaatc
ggcgcacatgtgccagccgagcattgtcgcatttcgctggtcgatcgtatttttacgcgc
ttgggagcgcaggatgacatcatggctgggcagagcacatttttggttgaattaaatgag
acatcgttgattttgaagcatgcaacagttaacagcctggtgctgcttgatgaattagga
cgtggcacggccacctacgatggcactgctatcgctgcttcggtagtcaactatctcgca
gatttgaaatgccgcacgcttttctctacacactaccacaatcttattgaatatttccac
aaagacgaacgcataacattgggtcacatggcttgcatggtggaaaacgaggataccgaa
gatcccacacaggagacggtgacattcctttacaaatacagcgctggcgcatgcccgaaa
tcgtatggtttcaatgctgccaaattggctggcatgccacaaccgattataaagcgtgct
tacgagctttctaaacgcgtggaggctatcgctttgaaacgtaaggtcctgtccaaagtt
gttgctggcgctggtggcaacagatgcaacgatcttaaagaaattaaaaacttacttttg
cagctaaaagcttgtcatgtttaa
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