KEGG   Bactrocera dorsalis (oriental fruit fly): 105227203
Entry
105227203         CDS       T09719                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit Rpb4 isoform X2
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
bdr  Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03020  RNA polymerase
bdr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bdr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105227203
  09124 Replication and repair
   03420 Nucleotide excision repair
    105227203
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdr03021]
    105227203
   03400 DNA repair and recombination proteins [BR:bdr03400]
    105227203
Transcription machinery [BR:bdr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105227203
DNA repair and recombination proteins [BR:bdr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105227203
SSDB
Motif
Pfam: RNA_pol_Rpb4 CCDC93_CC AAA_5
Other DBs
NCBI-GeneID: 105227203
NCBI-ProteinID: XP_011204737
UniProt: A0A6I9V118
LinkDB
Position
5:70180606..70183628
AA seq 139 aa
MSFMNPVDMVEEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEEQEFSEVFMK
TYAYTDSFRKFKNKETIAAVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFE
DEELRQILDDIGTKRSLQY
NT seq 420 nt   +upstreamnt  +downstreamnt
atgtctttcatgaatcccgtggatatggttgaggaagatgcagcggatcttcaatttcca
aaggaatttgagaacgcagagaccttgttgatatccgaagttcacatgttgcttgaccat
cgcaaacgacagaatgagtccgccgatgaggagcaggagttctccgaagtttttatgaag
acatatgcatacacagatagttttcgcaaattcaaaaataaggaaacaattgcagcggta
cgcagtcttttaatgcagaaaaaattgcataaattcgaattggccgcactgggtaacctg
tgccctgaagcgcccgaggaggctaaggcgttaataccatcgttggaaggacgtttcgaa
gacgaagagttgcgacaaatacttgacgacataggcaccaagcgcagcttacaatattga

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