Bactrocera dorsalis (oriental fruit fly): 105227498
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Entry
105227498 CDS
T09719
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bdr
Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03020
RNA polymerase
bdr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105227498
09124 Replication and repair
03420 Nucleotide excision repair
105227498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdr03021
]
105227498
03400 DNA repair and recombination proteins [BR:
bdr03400
]
105227498
Enzymes [BR:
bdr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105227498
Transcription machinery [BR:
bdr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105227498
DNA repair and recombination proteins [BR:
bdr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105227498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
105227498
NCBI-ProteinID:
XP_011205159
UniProt:
A0A6I9V6L4
LinkDB
All DBs
Position
Unknown
AA seq
1889 aa
AA seq
DB search
MATNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPK
IKEIVMKSKGQPRKRLAYVYDLCKGKTVCEGGEDMDMAKDGQQTDPNKKQGHGGCGHYQP
SLRRSGLELTAEWKHVNEDSQEKKIIVTAERVWEILKHITDEECFILGMDPKYARPDWMI
VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELKKNEGTGAAAHVIQENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQMMNLLMFLPTWDGKVPQPCILKPRPLWTGKQLFSLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKAFEKRFKFDWSNERYMRKVFTDDVIKELSESGNALPELEIEWDQLCRDREALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDHL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSAEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEETKF
QDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCRYGIEIPSTLGSSMIGGSAMFFGAGATPS
MTPPMTPWVQCGTPRYFSPSGQMSGMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSP
GPSMSPYLPPSPSVSPSYSPTSPNYTASSPGAASPNYSPTSPNYSPTSPLYPATSPRYST
TPNFAPQSTGYSPSTSGYSPTSPVYSPTSNYQSSSPSFSGSGTNMYSPGSAYSPTSSNYS
PNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPSSPNYTPVTPSYSPTSPNYSASPH
YSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYS
PSSPQHSPANQYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPM
YSPTAPSQGYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaacgattccaaggcacctttacgccaggtgaaacgtgtgcaattcggtatt
ttatcacctgatgaaattcgtcgcatgtccgttacagaaggaggcgtacagtttgccgag
accatggaaggtggtcgaccaaagttgggcggtctaatggacccacgtcaaggtgtaata
gacagaacttctcgatgccaaacctgtgctggtaatatgacagaatgcccgggacatttt
ggccatatcgatttggcaaaaccagtttttcatattggttttattacaaaaacaattaag
atattgcgttgtgtgtgcttttactgctctaaaatgttagtatctccacaaaatccaaaa
attaaggagattgttatgaaatcaaagggacagccacgaaagcgtctggcgtatgtatat
gatttatgtaaaggtaaaactgtgtgcgagggtggcgaagatatggatatggcaaaagat
ggtcaacaaacggatcctaataaaaaacaaggtcacggtggttgcggtcattatcaacca
tcattgagacgtagtggattagagttgactgccgagtggaagcatgtaaatgaagattca
caggaaaagaaaatcatagtaacggcggagcgtgtttgggaaattttaaaacatataact
gatgaagaatgtttcattctcggtatggatcccaaatatgcacgacctgattggatgatt
gtcacggtattgcctgtaccaccattagctgtgcgtccagctgttgttatgtttggcgca
gctaagaatcaggacgatttaacgcataaacttgcggatatcattaaagcaaacaatgaa
ttgaaaaagaatgaaggcactggcgcagcagcgcatgttatacaagagaatatcaaaatg
ttgcaattccacgtcgctacgctagtagataatgacatgcccggtatgccacgcgctatg
caaaaatctggcaaaccgctcaaagccataaaggcacgtttgaagggcaaagaagggcgt
attcgtggtaatttgatgggtaagcgtgtcgatttctcggcacgtactgtcatcacacca
gatcccaatttgcgtattgatcaagtcggtgtaccacgttccattgcgcaaaatttaaca
tttccagagctagtgactccctttaatatcgatcgtatgcaggaattggtacgacgtggt
aattcacaatatccgggtgccaagtatattgtacgtgacaatggtgagcgtatagatttg
cgttttcacccaaaaccatccgatttgcatttgcaatgtggttataaagtagaaagacat
ttacgcgacgatgatctggttattttcaatcgtcagccaacgctacacaaaatgagtatg
atggggcatcgtgtcaaagtattgccttggtctacattccgtatgaacctgtcctgtact
tcaccctacaacgctgatttcgacggagatgaaatgaacttgcacgtaccgcaatcgatg
gaaacccgtgctgaggtggagaatatacacgttacaccacgtcaaattatcacaccacag
gccaacaaacccgtcatgggtattgtgcaggatactctaacagctgtgcgtaaaatgaca
aaacgtgatgtattcattacgcgtgaacaaatgatgaacttacttatgttcttacccaca
tgggatggtaaagtaccacagccgtgtattttgaaacctcgtccgctatggacgggcaaa
caattattttcactgattatacccggcaatgtaaacatgatacgcacacattctacacat
ccagatgatgaagatgatggtccttacaagtggatctcacctggtgacactaaggtcatg
gtagaacatggtgaattgattatgggtatcttgtgtaaaaagacactgggtacatcggcg
ggttcactgctgcatatttgtttcttggaattgggtcacgaaatcgccggtcgtttctac
ggtaacattcagactgtaattaataattggctattgctcgagggtcacagcatcggtatt
ggtgacacaattgccgatccacagacctataacgaaattcagatggccatcaagaaagcc
aaagacgatgtcataaacgttattcaaaaagcgcacaacatggagttggagcccacaccc
ggtaataccttgcgtcagacattcgagaatcaggtgaatcgtatcttgaacgatgctcgt
gataaaactggtggttctgctaagaaatctttgactgaatacaacaatttaaaggctatg
gtggtgtcgggttcgaagggttccaatattaacatctcacaggttattgcttgtgtgggt
caacagaacgtcgagggtaaacgtataccatacggttttcgtaaacgcacattgccgcat
ttcattaaagacgattacggtcctgagtcgcgtggcttcgtggagaattcatatcttgcc
ggtttgacaccttcggaattctactttcacgctatgggtggtcgtgaaggtcttatcgat
actgctgtcaagactgctgaaactggttatattcaacgtcgtctcataaaggctatggag
tcggttatggtcaactacgacggtactgtgcgtaattctgtgggtcagctgattcaattg
cgttacggcgaggacggtttggctggtgaaaccgtagagtttcaaaatttgccaactgtc
aaattgtccaacaaagcatttgagaagagattcaaattcgattggtccaatgagcgttat
atgcgtaaagttttcactgacgatgtgatcaaagagctaagcgagagtggtaatgcgttg
cccgagctggagattgagtgggatcaactgtgtcgcgatcgtgaagcattgcgtgagatt
ttccccaatggcgattctaaggttgtattgccttgcaatttgcagcgcatgatttggaat
gtacagaagattttccacattaataagcgcatgcccacagatttgtcgccactgcgcgta
attaacggcgtacgcgatctgttgcaacgctgcgtcattgtggttggcaatgatcacctt
tcgaaacaagccaatgagaacgccacactgctgttccagtgtttggtgcgctctacgctt
tgcacaaaatatgtagcggaggagttccgtctctcagccgaggcgttcgaatggttgatt
ggtgaaatcgaaacgcgtttccagcaggcacaagccaaccccggcgaaatggtgggcgct
ttagctgcgcagagtttgggtgaacccgccacacagatgacactgaatactttccatttt
gctggtgtgtcgtcgaagaacgtaacactgggtgtgccgcgtctaaaggaaattattaac
atatcgaagaaaccaaaagcgccctcactaactgtatttcttactggcggtgcggcgcgt
gatgccgagaaagctaagaatgtactgtgtcgtttggaacacaccaccttgcgtaaagtg
acagccaacactgctatttactacgatcccgacccgcagagaactgtcatttcggaggat
caagaattcgtgaatgtctactatgagatgcccgatttcgatccgacacgcatttcacct
tggttgctgcgtattgaattggatcgcaaacgcatgaccgacaaaaaattaactatggaa
cagattgccgagaagatcaacgccggtttcggtgacgacttgaactgtattttcaatgat
gacaacgctgacaaattggtgttgcgcatacgtatcatgaacaatgaggagaccaagttc
caagatgaagacgaagcagtcgataaaatggaggatgatatgttcttgcgttgtattgaa
gcgaatatgctctcagacatgacattgcagggcatcgaagccattggcaaagtgtacatg
catttaccacaaacggacagtaaaaaacgtattgttatcacggagacgggggaatttaag
gccattggcgagtggctgctggaaactgacggtacttcaatgatgaaagtactctccgaa
cgtgatgtggatcctgtgcgtacatcgtccaacgatatttgtgaaattttccaagtattg
ggcatagaggctgtacgtaaatcggttgaaaaggaaatgaatgctgtgctgcagttctac
ggcttgtacgtgaactatcgtcatttggccttgttgtgtgacgtaatgacagctaagggt
cacttgatggccattacacgtcacggtatcaatcgacaggacactggtgcacttatgcgt
tgctcattcgaagaaacggtcgacgtgttgatggatgccgccgcgcatgcggaaaccgat
ccgatgagaggtgtgtcggaaaacattattatgggtcaattgccgcgtatgggcacgggt
tgtttcgatttgctgctcgatgctgagaaatgtcgctacggcattgaaataccgagcaca
ttgggctcgagcatgattggcggttcggcaatgttctttggcgccggtgctacgcctagc
atgacaccacccatgacaccttgggtacagtgcggcacaccgcgctatttctcaccatct
ggtcaaatgagtggcatgacacctggtggtcccagcttctctccatcagccgcctctgat
gcttcgggcatgtcgccaagttggtccccagcccatcctggctcatcgcctagttcacct
ggcccctcgatgtcaccatatttgccaccatcgcccagcgtttcaccatcatattcgccg
acaagtccgaattataccgcttcatcgccgggtgccgcttcacccaattactcaccaacc
agtccgaattattcgccgacaagccccttgtatccggccacaagcccacgttactcaaca
acaccgaatttcgcaccccagtcgactggctactcaccatcgaccagcggttattcacca
acatcaccagtctattcgccgacttcaaattatcaatcgtccagtccatcgttttcgggc
agtggcacaaatatgtattcgccgggcagcgcttactcaccaacatcttcgaactactca
ccaaattcaccaagttattcgcccacatctccgtcttattcaccttccagtccgtcgtat
tcaccaacttcaccatgttattcgcccacgtcaccgtcgtattcaccatcatcaccaaac
tatacaccagttacaccatcatattcaccaacctcaccgaattattcggcttcaccacac
tattcgcccgcttcaccggcatattcgcaaacgggtgtcaaatattcacccacttcacca
acttattcgccgccatcaccatcatacgatggatcgcccggttcaccacaatatacgccc
ggttcgccacagtactcgccggcttcgccgaagtactcaccaacatcgccactttattcg
cccagctcaccgcagcattcaccggccaatcaatacagtccaaccggctccagttactcg
gctacaagtccacgctattcccccaacatgtcgatctactcaccgagtagcaccaaatat
tcaccaacatcgccgacgtacacaccaaccgcacgcaattactcgcccacatcaccgatg
tactcgccgacggcaccatcacaaggctacagcccaaccagtccagcatattcaccgagt
agtcccacattcgaagagagtgacgattaa
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integrated database retrieval system
