Bactrocera dorsalis (oriental fruit fly): 125778620
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Entry
125778620 CDS
T09719
Name
(RefSeq) ATP-dependent RNA helicase WM6-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bdr
Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03013
Nucleocytoplasmic transport
bdr03015
mRNA surveillance pathway
bdr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125778620
09122 Translation
03013 Nucleocytoplasmic transport
125778620
03015 mRNA surveillance pathway
125778620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdr03019
]
125778620
03041 Spliceosome [BR:
bdr03041
]
125778620
Enzymes [BR:
bdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125778620
Messenger RNA biogenesis [BR:
bdr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125778620
Spliceosome [BR:
bdr03041
]
Complex C
Other components
EJC/TREX
125778620
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125778620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Ned1_M
CSN1_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
125778620
NCBI-ProteinID:
XP_049313115
UniProt:
A0ABM3JV42
LinkDB
All DBs
Position
5:63938312..63939762
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AA seq
423 aa
AA seq
DB search
MADNIDLLDYEEEELVEPTIEPVAKKPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCG
FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVPYVLVMCHTRE
LAFQIGKEYERFAKYMTNVKVGVYFGGLAIQNDEKSLKDKMPHIIVGTPGRILALIRNKK
LNLKNLKHFVLDECDQMLEHIDMRRDVQEIFRSTPHAKQVMMFSATLSKDIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQHYAQLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIALS
QLLSEQNFPAVGIHRGMSQEERLKRYQEFKDFQKRILVATNLFGRGMDIERVNIAFNYDM
PESSDTYLHRVARAGRFGTKGLAISFVSDEADNKILSEVQSRFDVKITELPDQIELSSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacatcgatctcttggactacgaggaagaggagctggtcgagcccaccatc
gaaccagtggccaaaaaaccgaagaaagacgtgaaaggcacttatgtgtccatacatagc
tctggatttcgtgattttctgctaaaaccggagattctgcgtgctatcgtggactgcggc
ttcgagcatccatctgaggtgcaacacgaatgcataccacaagcggtactcggcatggat
atactgtgtcaggccaagtccggtatgggtaagaccgcagtgtttgtgctggcgacacta
cagcagctggagccaacggagaatgtgccctacgtgttggttatgtgtcacacacgtgag
ctggccttccagatcggcaaagagtatgaacgcttcgccaagtatatgacgaatgtgaag
gttggcgtctacttcggtggcttggccatacaaaatgatgagaagtctttaaaggacaaa
atgccacacataatcgtcggcacacctggacgcatactagctttgatacgcaacaagaaa
ctgaatctgaaaaatctgaaacacttcgtgctcgacgaatgcgatcagatgttggagcat
attgatatgcgtcgcgatgtgcaggagatcttccgcagcacgccgcacgccaaacaggtg
atgatgttctccgccacgttgagcaaagacatacgtccggtgtgcaagaaattcatgcaa
gaccctatggaggtctatgtagatgacgaggccaagctgacattgcatggcttgcaacaa
cactacgcacagctgaaggagaacgagaagaataagaaactgttcgagctgttggatgtg
ctcgaattcaatcaggttgtcatctttgtgaaatcagtgcaacgctgcatcgcgctcagt
caactgctgagcgagcagaacttccctgcggtcggcatacatcgtggcatgtcgcaggag
gagcgtttaaaacgttatcaagagttcaaggatttccaaaaacgcattttggttgccacc
aatctctttggacgcggcatggatatcgagcgtgtgaacatcgccttcaactatgacatg
ccggagagcagcgacacctacttgcatcgtgtggcacgcgctggacgcttcggcaccaaa
ggtttggccatctccttcgtttcagatgaggcggataataaaattttgagtgaagttcag
tcaagatttgatgtgaaaatcacagagttgccagatcaaatcgaattgagctcgtatatc
gagggacgctga
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