Bacteroides difficilis: ACNOGP_03545
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Entry
ACNOGP_03545 CDS
T11389
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bds Bacteroides difficilis
Pathway
bds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACNOGP_03545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bds03019
]
ACNOGP_03545
03009 Ribosome biogenesis [BR:
bds03009
]
ACNOGP_03545
Enzymes [BR:
bds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACNOGP_03545
Messenger RNA biogenesis [BR:
bds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACNOGP_03545
Ribosome biogenesis [BR:
bds03009
]
Prokaryotic type
rRNA helicases
ACNOGP_03545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XPI37148
LinkDB
All DBs
Position
919986..921851
Genome browser
AA seq
621 aa
AA seq
DB search
MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LLQQIDVKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILADVPKERNT
LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAKDKYEALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IGKKFIPGEMPTAAGICQKQLLKVIDELEKVKVNEEEIAEFMPDIYRKLEWLSKEDLIKR
MVSHEFNRFAEYYRNRAEIEIPTDSRGERAGRGDRKEGGFEKRSRKAAPGFNRLFINLGK
TDSFFPSDLIGLLNSNTRGRIELGRIDLMQNFSFFEVPEKETINVVKALSRSKWNGRKVV
VEVSNEEGGKERAPRRENKDRKPKEVSVKGSKAGKKEKPSRAERGYANARGPKKKDDWQA
FFKDKEPDFSEEGWARRKPKK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggagatacgtagagcaattgaagagatg
ggatatgagaatcccatgccggtacaagaagaagtgattccgtaccttttaggagaaaat
aatgatgtagtagctcttgcacagacaggaacaggtaaaacagccgcattcggtttgccc
ttgctccaacagattgacgtaaaaaacagaattccacaatcacttatcctctgccctacc
cgtgagctttgcctccagatagcaggtgatctgaatgattattccaaatacattgacgga
ctgaaagtgctgcctgtatatggcggttcttctatcgacagtcagatacgcagcttgaaa
aggggggtacatatcattgtcgccactcccggacgtttgctggatttgatggaacgcaaa
accgtatctctatcgactatccgcaacgttgtgatggacgaagcggacgagatgctgaac
atgggatttacggaaagtatcaacgctattcttgccgatgttccgaaggagcgtaacaca
ttgcttttctcggcaacgatgagcccggaaatcgcgcgtatctcaaagaattacctgcag
aacgcaaaagaaatcacgattggtcgtaaaaacgaaagcaccagtaacgtaaagcacgtt
gcctatacggtgcacgccaaagataaatacgaagcgctgaaacgcatcgttgactattat
ccgcagatctacggtatcatcttctgccgcacacgtaaggaaactcaagagattgcagac
aaactgatgcaggagggttataacgccgattcactgcacggtgaactttcgcaggcgcaa
cgcgatgctgtaatgcaaaaattccgtatccgcaacttgcaactgcttgtcgctacggac
gtagctgcccgtggtctggacgtggacgacctgactcatgtcatcaattatggattgccg
gatgacacggaaagttatacccaccgtagcggtcgtacgggacgtgccggaaagactggt
acttctatcgctatcatcaacctccgcgagaaaggaaagatgcgcgagatagagcgcatt
atcggcaaaaagttcattccgggcgaaatgccgacggcagccggaatctgtcagaagcag
ttgctgaaagtgattgacgagcttgaaaaggtgaaagtcaatgaggaagagattgccgag
ttcatgccggacatttaccgcaaactggagtggttaagcaaggaagacttgattaaacgc
atggtgtcgcatgagttcaaccgtttcgctgaatattaccgtaaccgtgccgaaatagag
atcccgaccgacagtcgcggagaacgtgccggacggggtgatcgcaaagaaggtggtttc
gagaaaagaagcaggaaagccgctccgggcttcaaccgtctgttcatcaacttgggtaag
acggacagtttcttccctagcgatcttatcggtctgctcaacagcaatacacgcggacgt
attgagctcggacgtatcgacctgatgcagaacttctctttcttcgaagttccggaaaag
gagacgatcaatgtagtaaaagctttaagtcgcagtaaatggaacggacgcaaagtggta
gtggaagtatccaacgaagaaggaggcaaagaacgtgccccacgccgtgagaacaaggat
agaaagcccaaagaggtctcggtgaaaggctccaaagcgggcaagaaagagaaaccaagc
cgtgccgaacggggatatgcaaacgcacgtggtcctaaaaagaaggatgattggcaggcg
ttcttcaaagacaaagagcctgacttcagcgaagaaggatgggcacgcagaaaaccgaag
aaatag
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