Bacteroides difficilis: ACNOGP_04740
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Entry
ACNOGP_04740 CDS
T11389
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bds Bacteroides difficilis
Pathway
bds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACNOGP_04740 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bds03019
]
ACNOGP_04740 (rnr)
03016 Transfer RNA biogenesis [BR:
bds03016
]
ACNOGP_04740 (rnr)
Enzymes [BR:
bds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACNOGP_04740 (rnr)
Messenger RNA biogenesis [BR:
bds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACNOGP_04740 (rnr)
Transfer RNA biogenesis [BR:
bds03016
]
Prokaryotic type
tRNA degradation factors
ACNOGP_04740 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XPI37372
LinkDB
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Position
complement(1290779..1292935)
Genome browser
AA seq
718 aa
AA seq
DB search
MAKKKEKKEKKAGKRMSKKELAALLIDFFHAKSSEILSMKYIFSELRLTTHPQKMLCVDI
LHDLLDDDYISEIEKGKFRLNNHGTEMIGTFQRKSNGKNSFIPEEGGEPVFVAERNSAHA
MNNDKVKITFYAKRKNREAEGEVIEILERANDTFVGTLEVAKSYAFLVTENRTLANDIFI
PKDKLKGGKTGDKAIVKITEWPDKAKNPIGQVIDILGKAGDNTTEMHAILAEFGLPYVYP
KAVETAADKIPAEITPEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVH
IADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFD
ITEKGEIKDSRIAHTVINSDRRFTYEEAQQIIETKEGDYKEEVLMLDTIAKALREKRFAA
GAINFDRYEVKFEIDEKGKPISVYFKESKDANKLVEEFMLLANKTVAEKIGHVPKNKKPK
VLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIET
VSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDGGRSVSEAKY
EDLCDHSSNMEQIAANAERASIKYKQVEFMSEHLGQIYDGVISGVTEWGLYVELNENKCE
GLVPVRDLDDDYYEFDEKNYCLRGRRKNRTYSLGDAITVRVARANLEKKQLDFELIEK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagaaagaaaagaaagagaaaaaggccggtaagagaatgagtaaaaaagag
ctggcagcgttgttaatagactttttccacgccaaatccagtgaaattctaagtatgaaa
tacattttctcggaattgcgtcttaccacccatccgcagaaaatgctatgcgtcgatata
ttacatgaccttttggatgacgattatatctccgaaattgagaagggcaagttccgtctg
aataatcacggcacagaaatgataggtaccttccaacgcaaaagcaatggaaagaattcc
tttattcccgaagaaggaggcgaaccagtattcgtagcagaacgcaattccgcccatgcc
atgaacaatgacaaggtaaaaattacattttatgccaaacgaaagaacagggaggcagaa
ggggaagtaatcgaaatactggaacgtgccaacgacacttttgtcggtacattggaagta
gccaagtcatacgcatttctagtaacggaaaaccgtacacttgccaatgacatatttatt
ccgaaagataaactgaaaggcggaaaaaccggagataaagcgatcgtgaaaataacagag
tggcctgacaaggcaaagaatcccatcggacaagtgatagacatattgggcaaagcaggc
gacaataccactgagatgcacgccattctcgcagaattcggcttaccatacgtatacccg
aaagcagtagagacagcagccgataagattccggcagaaatcactcccgaagagatagcc
aagcgtgaagatttccgcaaggtgacaactttcactatcgacccgaaagatgctaaggat
ttcgacgatgcgctttccatccgctccatcaaaaacggattgtgggaagtaggcgtacac
attgccgatgtgacacactatgtaaaagaaggaggaatcatcgacaaagaagctgaaaag
cgtgccacttccgtttatctggtagaccgcaccatcccaatgctccccgaacggctgtgc
aacttcatctgttcgctccgtccgaatgaagagaaactcgctttctccgtgattttcgat
attaccgagaaaggagaaatcaaagactcacgcattgcgcatacagtcatcaattccgac
cgccgtttcacttacgaagaggcgcagcaaattattgaaactaaagaaggtgactacaaa
gaagaagtacttatgctggacaccatcgcgaaagcactccgcgaaaaacggttcgcagcg
ggagcaatcaattttgaccgctacgaggtgaaattcgaaattgacgagaaagggaaacct
atcagtgtgtatttcaaagagtcgaaagacgccaataaactggtagaagaatttatgctt
cttgccaacaaaaccgtagcagagaagataggacatgtacccaaaaacaaaaagcctaaa
gtactgccctaccgtatccacgatctgccggatccagagaaactggagaatctgtcacaa
ttcatcgcccgcttcggctacaaggtacgtacaagcggaacaaaaacagatatttcaaaa
tccatcaaccatttgttggatgatatacatggaaagaaggaagagaatctgattgagacc
gtgtctatccgtgctatgcagaaagcccgttattctacacataacatcggtcactacgga
ctggcattcgattattatactcatttcacctcacccatccgccgtttcccggacatgatg
gttcaccgtctggtaacgaagtatatggacggaggacgcagtgtatccgaggctaaatat
gaggatctttgtgatcacagttcaaatatggaacaaattgcagccaacgccgaacgtgct
tccatcaaatacaaacaagtggaattcatgagcgaacatctaggacagatttacgatggt
gtcatctccggagtaaccgaatggggactgtatgtcgaacttaacgagaataaatgcgaa
ggtctcgtccctgtccgtgacttggatgacgattattatgagtttgacgaaaagaactat
tgccttcgtggacgccgcaagaacagaacatatagtttgggagatgctattactgttcgt
gtagcacgtgccaatctggaaaagaaacagctcgacttcgaattaattgagaaataa
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