Bacteroides difficilis: ACNOGP_06955
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Entry
ACNOGP_06955 CDS
T11389
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bds Bacteroides difficilis
Pathway
bds02020
Two-component system
bds02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bds00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACNOGP_06955 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACNOGP_06955 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bds03021
]
ACNOGP_06955 (rpoN)
Transcription machinery [BR:
bds03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACNOGP_06955 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
WHD_RNase_R
LacI
PolB_pipolin_C
Motif
Other DBs
NCBI-ProteinID:
XPI37780
LinkDB
All DBs
Position
1880655..1882139
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AA seq
494 aa
AA seq
DB search
MAQGSRQIQSQAQQQIQTLSPQQILVVKLLELPTVELEDRIHAELLENPALEEGKEENVA
DEYSDGDTSGEGMENDANEYDSLSDYLTEDDIPDYKLQENNRSKDEQAEDIPFSDSTSFY
EILKEQLRERNLTEHQHELVEYLIGSLDDDGLLRKSLESICDELAIYAGIESTEEEQEEA
LCILQDFDPAGIGARDLQECLLIQIRRKKEEGMNPAPILDIEERIVRDCYEEFTRKHWEK
IIKKLDVDEETFNEAISEITKLNPRPGASLGEAIGRNLQQIVPDFIVETYDDGTINVSLN
NRNVPELRMSRDFTEMVEEHTKNKANQSKESKEAMMFLKQKMDAAQGFIDAVKQRQNTLM
TTMQAIIDLQRPFFLEGDESLLKPMILKDVAERTGLDISTISRVSNSKYVQTNFGIYPLK
FFFSDGYTTEDGEEMSVREIRKILKECIDGEDKKKPLTDDELADILKEKGYPIARRTVAK
YRQQLNIPVARLRK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaggttcccgtcaaatacaatcgcaggcacagcagcaaatccaaacgctctcg
cctcagcagattctagtcgtgaaactgttggagcttcccacagtagagctggaagaccgt
atccatgctgaactgcttgaaaatccggcacttgaggagggcaaagaagagaatgtcgca
gatgaatattccgatggcgacacttccggagagggtatggagaatgatgccaacgaatac
gattctttgagtgattatctcaccgaagacgatattcccgactacaaactgcaagagaac
aaccgatccaaagacgagcaggcggaagatattccgttctccgactctacctctttctac
gaaatactgaaagagcagcttcgtgaacgcaatttgacagaacaccagcatgaactggtg
gaatacctgatcggctcgttggacgatgacggcttgctccgcaaatctttggaaagtatc
tgtgacgaactggctatttatgccggtatagaatctacggaagaggagcaggaagaagca
ctctgcatcttgcaggatttcgatccggcaggtatcggagcacgtgaccttcaagaatgc
ctgttgatacagatccgccggaagaaggaagaagggatgaatcccgctcctatattggat
atcgaagaacgcatcgtcagagattgttatgaagaatttacccggaagcattgggaaaag
attataaaaaagctggatgttgatgaagagacattcaatgaagctatcagtgagattaca
aagctgaatccccgtccgggagcttctttgggagaggctatcgggaggaacctccagcag
atagtccccgacttcatcgtagaaacgtatgatgacggtactatcaatgtcagccttaat
aaccgcaatgttccggagcttcgtatgagtcgtgattttacggagatggtggaggaacat
accaagaataaggccaaccagtccaaagagtccaaagaagcgatgatgtttctgaaacag
aagatggatgcggcgcaaggatttatagatgcggtcaaacagcggcagaatacgttgatg
actactatgcaagctatcatcgacctgcagcgtcctttctttctcgaaggggacgaatcc
ctgctgaaaccgatgattctgaaagatgtggccgaacgcacgggactggatatatcgacc
atttcccgtgtcagcaacagtaaatatgtgcagaccaatttcggtatttatccgttgaag
ttcttcttcagcgacggatatacgacggaagacggggaagagatgtctgtccgcgagatt
cgtaagattttgaaagaatgtatcgacggagaagacaagaagaaaccgttgacagatgat
gaattggcggacatactgaaagaaaaaggctaccccattgcacgtcggacagtggcgaaa
taccgtcagcagttgaatatcccggtggcaagacttagaaaataa
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