Bacteroides difficilis: ACNOGP_10395
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Entry
ACNOGP_10395 CDS
T11389
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bds Bacteroides difficilis
Pathway
bds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACNOGP_10395 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bds03021
]
ACNOGP_10395 (rho)
03019 Messenger RNA biogenesis [BR:
bds03019
]
ACNOGP_10395 (rho)
Transcription machinery [BR:
bds03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACNOGP_10395 (rho)
Messenger RNA biogenesis [BR:
bds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACNOGP_10395 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
XPI38416
LinkDB
All DBs
Position
complement(2801636..2803831)
Genome browser
AA seq
731 aa
AA seq
DB search
MYNIIQLNDKDLSELQIIAKELGIKKTDSYKKEDLVYKILDEQAIVGATKKVAADKLKEE
RKEEKKKRSRVTPAKKEDKVVSATKTGEVTKTKEAAPAKAQQAPKEETTNKEKETPAVET
KTENAVAPKRKVGRPRKNSDTTDKKEVEETKQVASNSVEAKPVVAEKAPETTEKTTPAQQ
QSTEKKEKPSKPAVEKDKPAAEKAVEKKVVAKPQKKSEPVIDEESNILTGADDDDFIPIE
DLPSEKIELPTELFGKFEATKTEPVQSAPEQVAQPQQQQSQSQQQRPRIVRPRDNNNANN
NANNNFQRNNNQNQGQNQNQHQQRLPMPRATQQNNASENLPAQQPQERKVIEREKPYEFD
DILNGVGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGVIRPPKE
GEKYFPLVKVSKINGRDAAFVRDRVPFEHLTPLFPDEKFKLCKGGYSDSMSARVVDLFAP
IGKGQRALIVAQPKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARSVNAEV
IASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLARAYNTVSPASGKVLSG
GVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDR
NLSNKRIFPAVNITASSTRRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKDRLEKTR
DNDEFLMSMNS
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatccaattaaacgacaaagatctgtcggaacttcaaattattgccaaa
gaactaggcataaaaaaaacagactcatacaagaaagaagaccttgtttacaaaatactc
gatgaacaagctattgtaggagccaccaagaaagtagccgcagacaaactcaaggaagaa
cgcaaggaagaaaagaaaaagcgctcacgtgtaactccggctaaaaaagaggacaaagtg
gtttccgcaacaaagaccggagaagtaacaaaaacaaaagaagctgctcctgcaaaagca
cagcaagctcccaaagaagaaacaacaaacaaagaaaaagaaactcctgctgttgaaacc
aaaacagaaaacgctgttgctcctaaacgtaaagtaggccgtccgcgcaaaaattcagat
acaactgataaaaaagaagttgaagaaacgaagcaggtagcttccaacagtgtcgaagcg
aagcctgtagttgcggagaaagcacccgaaacaacggaaaaaacaactccggcacagcaa
caatctaccgagaagaaagaaaagcctagcaaacctgctgtggaaaaagataaacccgct
gcagaaaaagctgtagaaaaaaaggtggttgccaaaccgcaaaagaaatctgaaccggtt
atcgatgaagaaagtaatatcctgaccggtgctgacgatgatgatttcattccaattgaa
gatctgccgtctgaaaagattgaacttccgacagaactcttcggtaagtttgaagcaaca
aagacagagcctgtgcaatcagctcccgaacaagtagcccaacctcagcaacaacagtct
caatctcaacaacaacgtccacgcattgtccgtccacgcgacaacaacaatgcaaacaat
aacgctaataataatttccagcgtaacaacaaccaaaatcaaggccaaaatcagaatcag
caccaacaacgcttgccaatgccacgcgctacgcagcaaaacaatgcgagcgaaaacctt
ccggcacagcaaccgcaagagcgtaaagtgattgagcgtgagaaaccttacgaatttgat
gacatcctcaacggagtaggagttttagaaattatgcaggacggatacggtttcctccgt
tcgtccgattacaattacctttcctctccggatgacatctatgtatcgcaatctcaaatc
aaattatttggcttgaaaacaggcgacgtagtagaaggagtgattcgtccacctaaggaa
ggagaaaaatattttccgctagtaaaagtctcgaaaatcaacggacgtgacgctgctttc
gtccgcgaccgtgttccttttgaacacttaacccctcttttcccggatgaaaagttcaaa
ctctgcaaaggcggttattctgattctatgtctgcccgtgtagtagatcttttcgctccg
atcggtaaaggtcaacgtgcattgatcgttgctcagcctaagacgggtaagactatctta
atgaaagacatcgccaacgcaatcgcagccaatcatcccgaagtatacatgattatgttg
ctgattgacgaacgtccggaggaggtgaccgatatggcacgcagcgtaaacgcggaagtt
atcgcttccactttcgacgagccggcagaacgtcacgtgaaaatcgcgggtatcgtattg
gaaaaagcaaaacgtttggtagaatgcggtcatgacgtagtaatcttcttggactctatc
actcgcctggcacgtgcatacaatacagtttctccagcatcaggtaaagtactttccggt
ggtgttgatgcaaatgcacttcacaagccgaaacgtttcttcggagctgcgcgtaacatc
gaaaacggcggttcactgactatcattgctactgccctgattgacaccggttctaagatg
gatgaagttatcttcgaagaatttaaaggtacaggtaacatggaattgcagcttgaccgc
aacctgtctaacaaacgtatcttcccagctgtcaacatcactgcatccagcactcgtcgc
gatgacttgttacttgacaaaacgactcttgaccgtatgtggatattacgtaaatacctt
gcagatatgaatccgattgaagctatggattttgtaaaagaccgtctggaaaaaaccaga
gataacgatgaattccttatgagtatgaacagctaa
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