Borrelia duttonii: BDU_715
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Entry
BDU_715 CDS
T00768
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
bdu
Borrelia duttonii
Pathway
bdu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bdu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BDU_715 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdu03021
]
BDU_715 (rpoD)
Transcription machinery [BR:
bdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BDU_715 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ACH93641
UniProt:
B5RMQ5
LinkDB
All DBs
Position
760321..762213
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AA seq
630 aa
AA seq
DB search
MNSVDNKDLQAFKKKNSKLIKTILNYLGDKKEITFEDLSTFLSGDMLEPDNIDCIYGILE
NEGIGLINEKIGSDICDVDELDEASKLDSQCMMLDDAIQVDDELDDKLDDFDDEVLDKED
YNSGYIKSGLLKDSNSEDPIRLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNEG
LVIENYYNLVNAIYSRVDKEEFFKKDREREKDNNFDYYNKKKRITSFYKSLLKPFQDRLV
KYVERKHRLYELGEDIFEESITNERLQIKELLKSIPLYQEELRLFSDDYIDSASKIKDLK
RQQKSILDRLKIDKVRNLRILGRDLAIPEKRERIEKSLNIREDLIKEQITEAQLAQKELE
RIEMYYEYPMDKIISMSEEILKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLV
QEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNR
ETRYLVQVLGKDPTDEELSIRLGWDLKKVKTVKNVSREPVSLETPIGEEEDSVLSDFIED
KAIKNPAKHTSFVVLQDQIRAVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRE
RIRQIESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgtagataataaagacttgcaggcttttaagaaaaaaaattcaaaattaata
aagactattttaaattatttgggagataaaaaggaaattacttttgaggacctatcaact
tttttatcaggagatatgttagagcctgataatattgattgtatttatggaattcttgaa
aatgaggggataggtttgattaatgaaaaaatagggtcagatatttgtgatgttgatgaa
cttgatgaggcaagtaagcttgatagtcaatgtatgatgttagatgatgctattcaggtt
gatgatgagcttgatgataaattggatgattttgatgatgaagttttagacaaagaagat
tataattcaggatacattaaaagtggtttattaaaagatagtaattctgaggatccaata
agactttatttaaaagaaataggaaaagagtttttattaactggaaatcaagaagtagaa
cttgcaaaacaaatggattctggggagagtataattgaaaatattcttaagaacgaggga
ttagttatagagaattattataatttggttaatgctatttattcaagagttgacaaagag
gaattttttaaaaaagatagagaaagggaaaaagataataattttgattattataacaaa
aaaaaaagaattacttcattttacaaatctttgttaaagccattccaggatcgtttagtc
aagtatgttgagagaaagcatagattatatgaacttggtgaggatatttttgaagagagt
attactaatgagagattacagataaaagagcttcttaagtcgattcctttatatcaggag
gaattacgtctgttttcagatgattatattgattctgctagcaagataaaagatttaaag
aggcaacaaaaatctatactggatagattgaaaatagataaggtgcgaaatcttagaatt
cttggcagggatttggctattcctgagaagagagagagaatagaaaaatctttaaatatt
agggaagatttaattaaggaacaaattacagaagctcaacttgctcaaaaagaacttgag
cggattgagatgtattatgaatatccaatggataagataataagtatgtcagaagagatc
cttaagggtaaacaaatgatgcaacatgcaaaggatcaattaattaaagctaatttgaga
cttgttgtaagtattgctaaaaaatatgctaatagaggtttacatttctttgatcttgtt
caagagggtaatattggtctaattaaagcggttgaaaaatttgagtataaaaggggattt
aagttttctacttatgctacatggtggattcgtcaggcaataacaagatcaatatcagat
caggcacgtaccattcgtgtacctgtacatatgattgaacagataaatagacttaatagg
gaaacaagatatttagttcaggttttaggtaaagatccaacagatgaagagttatcaatt
aggcttggttgggatctcaaaaaagtaaaaaccgtaaagaatgtttcaagagaacctgtt
tcacttgaaacaccaattggagaagaagaggattctgtgcttagtgattttattgaagat
aaggcgattaaaaatccagcaaagcatacatcttttgttgtattacaggatcaaataagg
gcagttcttggaactttgccagagagagaacaagaagttgttaagatgagatttggtctt
gaggatggatattctttaactcttgaagaagtgggattacattttaatgttacaagagag
agaattagacaaattgagtctaaagccttgaggagacttaagaatccaaaaaaaacccag
aaacttaaagattatttggaagatttaaattga
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