KEGG   Bradyrhizobium dasycarpum: ACETMP_23700
Entry
ACETMP_23700      CDS       T11709                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bdy  Bradyrhizobium dasycarpum
Pathway
bdy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bdy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACETMP_23700 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdy03021]
    ACETMP_23700 (rho)
   03019 Messenger RNA biogenesis [BR:bdy03019]
    ACETMP_23700 (rho)
Transcription machinery [BR:bdy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACETMP_23700 (rho)
Messenger RNA biogenesis [BR:bdy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACETMP_23700 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT S1CSD-TOTE-2 AAA Fungal_virus_P2_C DUF5817_CT Spore_III_AA
Other DBs
NCBI-ProteinID: XHA09697
LinkDB
Position
complement(4953936..4955201)
AA seq 421 aa
MREIKLQDLKSKTPAELVSFAEEHGVENASTMRKQELLFAILKQLALAETDIVGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKAKHKVNFDNLTPLFPNQRFRMEIDDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITHNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPA
IDISRSGTRKEELITDPQVLKKMYVLRRILNPMGTMDAIDFLLDKLRSTKSNSEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaattaaacttcaggacctcaagtcgaagacgccggccgagctcgtctcgttc
gcggaagagcatggggttgagaacgccagcaccatgcgcaagcaggagctgctgttcgcc
attctcaagcagcttgcgctcgccgaaaccgacatcgtcggcgagggcgtcgtcgaggtt
ctctccgacggcttcggttttcttcgctcgcccgatgcgaattatctgccgggcccggac
gacatctacgtttcgccgtcgcagatccgccgtttcggcctgcgcaccggcgacaccatc
gaaggccatatccgcagcccgaaagagggcgagcgctacttcgcgctgctgaaggtcaac
acgctcaatttcgaggatccggaaaaggccaagcacaaggtcaatttcgacaacctcaca
ccgctgtttccgaatcagcgcttccgcatggaaatcgacgatccgacgcggaaagacctt
tctgcacgggtgatcgacatcgtcgctcccatcggcaagggccagcgcgctctgatcgtg
gcgccgccgcgcaccggtaagaccgtgctgatgcagaacatcgcgcactcgatcacgcac
aatcatcccgaatgctacctgatcgtgctgttgatcgacgagcgtccggaagaagtcacg
gacatgcagcgctcggtgaagggcgaggtggtgtcgtcgaccttcgatgagccggcggtg
cgccacgtccaggtcgccgagatggtgatcgagaaagccaagcgtctggtcgagcatggc
cgtgacgtcgtgatcctgctcgattcgatcacgcgcctcggccgcgcctataacaccgtg
gtgccgtcctccggcaaggtgctgaccggcggtgtcgatgccaacgcgctgcagcgcccg
aagcggttcttcggtgccgcccgcaacatcgaggagggcggctcgctgaccatcatcgcg
accgccctggtcgataccggcagccgcatggacgaggtcatcttcgaagagttcaagggc
accggcaactcggaactgatcctggaccgcaaggtctcggacaaacgcaccttcccggcg
atcgacatctcgcgctccggcacccgcaaggaagagctcatcaccgatccgcaggtgctc
aagaagatgtacgtgctccgccgcatcctcaacccgatgggcacgatggacgcgatcgac
ttcctgctcgacaagctgcgctcgaccaagagcaattcggagttcttcgactccatgaac
acctga

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