Bdellovibrio sp. ZAP7: DOM22_03220
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Entry
DOM22_03220 CDS
T06441
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
bdz
Bdellovibrio sp. ZAP7
Pathway
bdz00470
D-Amino acid metabolism
bdz00550
Peptidoglycan biosynthesis
bdz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bdz00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
DOM22_03220 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DOM22_03220 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bdz01011
]
DOM22_03220 (murD)
Enzymes [BR:
bdz01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
DOM22_03220 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
bdz01011
]
Precursor biosynthesis
Amino acid ligase
DOM22_03220 (murD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
MurD_N
Pyr_redox
NAD_binding_7
Shikimate_DH
Pyr_redox_2
2-Hacid_dh_C
Pyr_redox_3
FMO-like
DAO
FAD_binding_3
TrkA_N
NAD_binding_8
ThiF
NAD_binding_2
HcgC
Tape_meas_lam_C
ApbA
PRK
F420_oxidored
KARI_N
3HCDH_N
Sacchrp_dh_NADP
DUF1542
Motif
Other DBs
NCBI-ProteinID:
QDK44233
LinkDB
All DBs
Position
638388..639776
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AA seq
462 aa
AA seq
DB search
MYKEFSELKDKRILVVGLGKTGVSLAHFLTKHGAQVTVTDHKSKPELSVQLEQLGDLPIK
YELGGHSPKTFIAQDLVILSPGVPSTLKIFDYARSQGIKITGEFEFSAGFIKEPIIGITG
TNGKTTVARITEAILTQSGVKTWVGGANEKPLVDYLRLDDKAQVVIAEVSSFMLEHCDTF
NPGNVVFTNLAENHLDRYRSMEEYVNAKRRVFKNTNQATTSILNADDNAVVELARDPAVQ
RGRIFYFSRKPALEPQIMNIGGAVNIGDEIRVRTGPEIETFNIKNMKMRGKHSIENVMAA
ILASREHGATREAVQKVIETFNGLPHRIEYVRKVGGVLFYNDSKATNVHAVLRALDTFDE
NVILIAGGKDTNLNYEPLRTSVKRKVKTLILVGEAKERINRDLGDFSETFLIGTFEEAVL
IAYQKSRIGDIVLLSPGCSSFDMFDSFEERGEYFKEIVRKFH
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtataaagagtttagtgaattaaaagacaaaagaatcctagtggtcggtcttggtaaa
acgggtgtgtctttggcgcatttcttgaccaagcacggcgctcaggtgacggtaacagat
cacaaatctaaaccggaactttctgtgcaacttgagcaattgggcgatcttccaattaag
tatgaattgggtggtcacagtccgaaaactttcatcgctcaggatttggttatcttgtct
ccaggcgtgccttctactttgaaaatcttcgattacgcaagatctcaaggtatcaagatc
acgggggagttcgagttctctgcgggttttatcaaagaacctatcatcggtatcacgggt
acaaacggtaaaacgactgtagcacgcatcactgaggcgatcttgactcaatcaggtgtt
aaaacttgggtgggtggcgcgaatgaaaaaccattggttgattaccttcgccttgatgac
aaagcgcaagtggtgatcgcagaggtttccagcttcatgcttgaacactgtgacacgttc
aatcccggcaacgtggtcttcacgaacttggctgaaaatcacttggatcgttaccgttca
atggaagagtacgtaaacgcgaaacgccgtgttttcaaaaacacaaatcaagcgacaaca
agcatcttgaatgcagacgacaacgccgttgtagagcttgcgcgtgatccagcggttcaa
cgtggacgtattttctacttctctcgtaaaccagctttggaaccacaaatcatgaacatc
ggtggtgccgtgaatatcggcgacgaaattcgcgtgcgcacaggtcctgagattgaaaca
ttcaatatcaaaaacatgaaaatgcgcggtaagcactctatcgaaaacgtgatggcagct
attttggcgtctcgcgaacacggtgcaactcgtgaagcggttcaaaaagtgatcgagaca
ttcaatggtcttcctcaccgtattgagtacgtgcgtaaagttggcggcgtcttgttctac
aacgactctaaagctacaaacgttcatgcggttcttcgcgctttggacacttttgatgaa
aacgtgattttgatcgcgggtggtaaagacacgaatttgaactatgaacctcttcgtacg
tcggtaaaacgcaaagtgaagactctgattttggtcggggaagctaaagagcgtattaat
cgcgaccttggtgacttctctgagaccttcctgatcggtacgtttgaggaggcggttttg
atcgcttaccaaaagtccagaattggggacattgtcctgctttctccgggctgctcaagt
tttgacatgtttgacagttttgaagagcgtggtgaatactttaaagagatcgtgagaaaa
tttcactga
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