Bdellovibrio sp. ZAP7: DOM22_03950
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Entry
DOM22_03950 CDS
T06441
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bdz
Bdellovibrio sp. ZAP7
Pathway
bdz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DOM22_03950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdz03021
]
DOM22_03950 (rpoC)
03400 DNA repair and recombination proteins [BR:
bdz03400
]
DOM22_03950 (rpoC)
Enzymes [BR:
bdz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DOM22_03950 (rpoC)
Transcription machinery [BR:
bdz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DOM22_03950 (rpoC)
DNA repair and recombination proteins [BR:
bdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DOM22_03950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QDK44365
UniProt:
A0A514XF26
LinkDB
All DBs
Position
791345..795478
Genome browser
AA seq
1377 aa
AA seq
DB search
MRDLLNFFDKPKDPLSFDAVRVSLASPEMIRDWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTQTKVRRERLGHIELATPVAHIWFLRSL
PSRIGNLLNLSLKDVEKVLYCEAHVVIDPMETTLEEGQVLTEEALNAALNEFGPSFKYGM
GGEAVRDLLRKIDPEYLSRKLRMEAKDVKSEAGMKKITKRLKVVEAFKGSINKPEWMMLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQ
EAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFVYNKLEEKGLAATIKQAKKLVEQETVEVWDILADVVKEHP
VLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCGAFNADFDGDQMAVHVPLSVESQVEA
RVLMMSTNNVLSPASGKPIINPSQDIVLGLYWLTRNRLGAKGTGKIFSTVQEAQYAYETG
LVDLQATCKVRINGKLQETTVGRAILSDSVPKEVPFNDVNVIMTKKQIAALIDKTFRLAG
AKATCILADKIMELGFKYSTSAGMSIGIDDMVIPAAKAPMIADAEKQVTEIQTQYDEGLI
TDGERYNKVVDIWAQTADKIAKEGMNAIEKQTFVIDGKEVVGPSFNPIYIMAESGARGSA
TQIRQLGGMRGLMAKPSGEIIETPITANFREGLTVIQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDVVVSELDCGIDDGLEITPVYEAGEIIQNIGDRILGRTTLRDVVDPQTN
NVVVRANQEITETDVKTIEGLGIDKVDIRSALVCQSKRGVCVKCYGRDLSRGATVNLGET
VGIIAAQSIGEPGTQLTMRTFHLGGAASRSVEQSVHTSRYDGVLKLQNVHAVTNRNGKLT
VMNRNGSALVIDEAGRERENFKLVYGAVLNFKEGDKVAKGQTVVEWDPYSNPIIAEVSAK
IQYQDIEEGSTMQEQVDAVTGFATKVIMESKSSDIKPTVFLVDGNGKTLNLPGRDIPARY
LIPVGAQLLAADGQEIHAGDVIAKMHRETSKTKDITGGLPRVAELFEARKPKEAAIISEI
DGYVTFGKDVKGKQRVIVTPEVGEQKEYLIPKGKHVAVREGEYVRAGEALMDGPTNPHDI
LAVLGAKALSAYLVDEIQEVYRLQGVAINDKHIEVIVRQMLRKVEIKDAGDSRFLAGEQA
ERYAFDEENARLSREGGQLATCNPLLLGITKVSLSTDSWISAASFQETTKVLTEAAINSR
TDHLRGLKENIIMGRLIPAGTGLTSYKRWKVSVAEDDDVNYVASLPGMSPSTQPHQG
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
ttgagagacttgttgaattttttcgataaaccaaaagatccactttcgtttgacgccgta
cgagtatcgttggcgtcacctgaaatgattcgtgattggtcatttggtgaagttaagaag
ccggaaactattaactatcgtacattcaagcctgaacgtgatggcttgttctgtgcgaaa
atcttcggtcctattaaggattacgagtgcttgtgcggtaagtataaacgtatgaagtac
cgtggcgtcgtctgtgaaaagtgcggcgttgaagttacacaaactaaagttcgccgtgaa
cgtctaggtcacattgagcttgcgactccagttgcacatatctggttcttgcgctcattg
ccttcccgtatcggtaacttgcttaacctttctttgaaagatgttgagaaagttttgtat
tgtgaagcacacgtggttatcgatccaatggaaacaacattggaagaaggccaagtattg
actgaagaagctttgaacgcagctttgaacgaattcggtccttcattcaaatacggcatg
ggcggcgaagctgttcgtgaccttttgagaaaaatcgatcctgaatacttgtctcgcaag
cttcgtatggaagctaaagacgttaagtctgaagcgggcatgaaaaagatcactaaacgt
cttaaggttgttgaggctttcaaaggctctatcaacaaacctgaatggatgatgttggaa
gcacttccagtgttgccaccagatctacgtcctctagttccactagatggcggtcgtttc
gcgacttcagatctaaatgatctttaccgtcgtgtgatcaaccgtaataaccgtttgaaa
cgtcttcaagagcttaacgctccagacatcatcatccgcaatgaaaaacgtatgttgcaa
gaagcagtagacgcattgttggataacggtcgtcgcggtaagacattcactggtccaaat
aaacgtcctcttcgctccctttcagatatgttgaaaggtaagcaaggtcgtttccgtcaa
aatctacttggtaaacgtgtggactactctggtcgttccgttatcgttgtaggcccgacg
ttgaaattgcaccaatgcggtcttcctaagaaaatggctttggagctattcaaaccattc
gtttacaacaaacttgaagaaaaaggcctagcggcaactatcaagcaagctaagaaattg
gttgagcaagagacagttgaagtttgggatatcctggctgacgtggttaaagaacatcca
gttcttctaaaccgtgcgccaactcttcacagacttggtatccaagccttcgaacctgta
cttcacgaaggtaaagcgatccaattgcatccactagtgtgcggtgccttcaatgccgac
ttcgacggtgaccaaatggcggttcacgttccactttctgtggaatcccaagttgaagct
cgtgttttgatgatgtctacaaacaacgttctttctccagcttctggtaagccaatcatc
aatccatcacaagatatcgtgttgggcttgtactggttgactcgtaaccgtttgggcgca
aaaggaactggcaaaatcttctcaacggttcaagaagctcaatacgcttacgaaacaggt
ttggtggacttgcaagcgacttgtaaagttcgtatcaacggtaagttgcaagaaacaact
gtaggtcgcgcgattctttctgatagcgttcctaaagaagttcctttcaacgacgtgaac
gtaatcatgactaagaaacaaatcgcagctttgatcgacaagactttccgtcttgctggt
gcaaaagcgacttgtatcttggctgataaaatcatggaacttggtttcaaatattcaacg
tctgcaggtatgtctatcggtatcgatgacatggttatcccagctgccaaagctccgatg
atcgctgacgctgaaaaacaagttactgaaatccaaactcagtacgatgaaggtttgatc
acagatggtgagcgctacaataaggtagtggatatctgggcgcaaactgctgataagatc
gctaaagaaggtatgaacgcgatcgaaaaacaaacattcgtaattgatggcaaagaagta
gttggaccttcattcaatcctatctacatcatggctgaatccggagcccgtggttccgcg
actcagatccgtcagttgggtggtatgcgtggtttgatggcgaaaccttctggtgagatc
atcgaaacgccgatcactgcaaacttccgtgaaggtttgacagttattcagtacttcatc
tctacgcatggtgctcgtaaaggtttggccgatacagcattgaaaacagcgaactctggt
tacttgactcgtcgtttggttgacgttgctcaagacgtagtagtttctgaattggattgc
ggaattgacgacggtttggaaatcactccagtttacgaagctggtgagatcatccaaaac
atcggtgatcgtatccttggtcgtacaacattgagagatgttgttgatcctcaaactaac
aacgtagttgttagagcgaaccaagagatcacagagactgacgttaaaactatcgaaggc
ttgggtatcgataaagtcgacatccgttcagccctagtgtgccaatctaaacgtggcgtg
tgtgtgaaatgttacggccgcgacttgtctcgtggtgcgactgtgaaccttggtgaaaca
gttggtatcatcgcagcacaatctatcggtgagccgggtactcagttgacgatgcgtacg
ttccacttgggtggtgccgcttctcgttcagttgagcaatcagttcatacatctcgttat
gatggtgttcttaaacttcaaaacgtacatgcagttactaaccgtaacggcaagttgaca
gttatgaatcgtaacggatctgcacttgttatcgacgaggcaggccgcgagcgtgaaaac
ttcaagcttgtttacggtgctgtattgaactttaaagaaggtgacaaagttgccaaaggg
caaacagttgttgagtgggatccgtactcgaatccaatcatcgcagaggtttctgcgaag
atccaatatcaggatatcgaagaaggttctacaatgcaggagcaagtggatgcggtaact
ggtttcgcgactaaagttatcatggaatccaaatcttctgacatcaaaccgactgtgttc
ctagttgatggcaatggtaagacattgaatcttcctggtcgtgacatccctgcgagatat
ttgatcccagtgggtgctcagcttctagcagctgacggtcaagaaattcatgccggtgac
gttattgcgaaaatgcatcgtgagacttcgaaaacgaaggatatcacgggcggtcttccg
cgcgttgctgaattgtttgaagctcgtaaaccgaaagaagcagcaatcatctctgaaatt
gatggttatgtgacattcggtaaagacgttaaaggtaaacaacgtgtaatcgtaactcct
gaagtgggtgagcaaaaagaatatcttatccctaaaggtaagcacgttgctgtaagagaa
ggtgagtacgtaagagccggtgaggcgttgatggacggtccaacaaatcctcatgacatt
ctggcggttctaggtgctaaagccctatctgcataccttgttgatgaaatccaagaagtt
taccgacttcaaggtgttgctatcaatgataagcatatcgaagtgatcgttcgccaaatg
ctacgtaaagtagaaatcaaggacgctggagacagccgcttcttggctggtgaacaagct
gaaagatacgctttcgacgaagaaaatgctcgtttgagccgtgaaggtggacaacttgct
acatgcaatccacttcttcttggtatcacgaaagtttctttgagcactgatagctggatc
tcagcagcgtcattccaagaaacaacaaaagtacttacagaagcggcgattaattctcgc
acagaccatttgcgtggtttgaaagagaatatcatcatgggtcgtttgatccctgcaggt
actggcttaacttcttacaaacgctggaaagtgtctgtagcggaagacgacgatgtaaat
tacgtggcatctttgccaggtatgtcgccttcaactcagcctcaccaaggttag
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