Bdellovibrio sp. ZAP7: DOM22_09250
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Entry
DOM22_09250 CDS
T06441
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
bdz
Bdellovibrio sp. ZAP7
Pathway
bdz00521
Streptomycin biosynthesis
bdz00523
Polyketide sugar unit biosynthesis
bdz00525
Acarbose and validamycin biosynthesis
bdz00541
Biosynthesis of various nucleotide sugars
bdz01100
Metabolic pathways
bdz01110
Biosynthesis of secondary metabolites
bdz01250
Biosynthesis of nucleotide sugars
Module
bdz_M01025
dTDP-D-Fuc4NAc biosynthesis, Glc-1P => dTDP-D-Fuc4NAc
Brite
KEGG Orthology (KO) [BR:
bdz00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
DOM22_09250 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
DOM22_09250 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
DOM22_09250 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
DOM22_09250 (rfbB)
00525 Acarbose and validamycin biosynthesis
DOM22_09250 (rfbB)
Enzymes [BR:
bdz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
DOM22_09250 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
QDK45324
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All DBs
Position
1892157..1893221
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AA seq
354 aa
AA seq
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MIFVTGGAGFIGSNFILNWIKKHNEPVVNIDKLTYAGNLENLKEVQDNPNYIFAKVDLLD
LNALEKLVKEHKPRAILNFAAESHVDRSIHGPGEFIQTNIVGTFNLLQVAKEYWSQLQGS
DKEKFRFLHVSTDEVYGSLELKDPAFSETTPYAPNSPYSASKAASDHLVRAYHHTYGLPT
VTTNCSNNYGPYQFPEKLIPLVIHNALNGKNLPIYGDGSNIRDWLYVVDHCEAIELALEK
GRLGETYNVGGWNEKKNIEVVDTICKTLDQVRPRSDGKSYLTQKVFVTDRPGHDKRYAID
ATKIEKELGWKPKENFETGLDKTIRWYLSNETWVSNIVSGSYREWLDKNYGGRQ
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatttttgttacgggcggcgcgggcttcattggttcgaattttattctaaactggatc
aagaaacataacgaacctgtcgttaatattgataaattaacttatgcggggaacttggaa
aaccttaaagaggttcaagacaatcccaactacattttcgccaaagtcgatcttttggat
ctgaatgctttggaaaaattagtgaaagaacacaagcctcgcgcgattttaaatttcgcg
gcagaaagccacgtggaccgttcgattcatggtcctggtgaattcattcagacaaatatc
gttggcacattcaatcttctgcaagtggcaaaggaatactggtcacaacttcaaggcagc
gacaaagagaaattccgtttcttgcatgtttcaactgatgaagtttacggaagccttgag
ttgaaggatcctgccttcagcgaaacgactccttatgctccgaacagtccgtattctgct
tctaaagccgcgagtgatcacttggtgcgtgcgtatcatcatacgtacggtcttccgacg
gtgacgacaaactgctcgaataactatgggccatatcaattcccagaaaagctgatccct
ctcgtaattcacaatgctttgaatggtaaaaacttaccgatctatggtgatggctcaaac
atccgtgattggttgtatgtggttgatcactgtgaggccatcgaacttgctttggaaaaa
ggtcgcttgggtgagacttacaatgtcggtggctggaacgaaaaaaagaacatcgaagtt
gtcgacactatctgcaaaacgttggatcaagttcgccctcgcagcgatggtaagagctat
ttgactcagaaggtattcgttaccgatcgcccaggccatgacaagcgctatgcgatcgat
gcaacaaaaattgaaaaagaattgggctggaaaccgaaagagaatttcgaaacaggtctt
gataaaactattcgctggtatttaagcaacgagacttgggtttctaatattgtttcaggt
agctaccgtgagtggttggataaaaactatggaggacgtcaataa
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