Bdellovibrio sp. ZAP7: DOM22_19915
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Entry
DOM22_19915 CDS
T06441
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bdz
Bdellovibrio sp. ZAP7
Pathway
bdz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DOM22_19915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdz03400
]
DOM22_19915 (mfd)
Enzymes [BR:
bdz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DOM22_19915 (mfd)
DNA repair and recombination proteins [BR:
bdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DOM22_19915 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF1409
MMtag
Motif
Other DBs
NCBI-ProteinID:
QDK47271
UniProt:
A0A514XNE1
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All DBs
Position
4096248..4099769
Genome browser
AA seq
1173 aa
AA seq
DB search
MKAEMTHTRLESILDRAFETTRGKIQVTGASSPLALAFFLSQTYSKKINGLPHLVVVGSQ
AEALKLQQLLQFFDPLRQSTVLPAFDVSAYSGLYPNTRSAADRVRFLAKAQAAKAGEIFI
ASPDALVQKTIPVKILKENSRTLSVGDELPEDIADYLNSLGYVSAPMVEDKGQYALRGGI
VDIFPPSEDAPVRLDLFGDQVETLRHFSVDDQRSSDEIKSFVLTPAREILFRDETHERLL
QRVRANIDDRPVEKAEADEMLRSLVLKNSFPGIEFLLPYFYGEPASPVDHFPNPINVWFL
DPVEISRSADENMAELKADYATSSSHVIRPDMDLLFQNFETITYPENSRQIYFSTLEYLD
ADNAAEAHVEYRTSLTQDFSNLSNSNPVGSELWLQAATNKLHKWRDDGYRIFVSTKNQSH
IDRLSLIFEKLELKAVRCGQDEYKWDTWLQDQDSDKHLVHIVSRYLSDSLRLDEERVIFL
RDEDFYGKKMRSRESTAAQDFQKQAKRLAFGDLKPGDLVVHVKHGVGIYEGLKIMAIGGV
ESEFIQVGFKDKDKLYLPVYRVGQLQKFSGAGATTVLDKLGGTAWEKTKAKVKSHVRDIA
ADLLALYAKRAEMHRPPFDFKENEIQLFENGFPYEETNDQLRAIGDILSDLKSTKPMDRL
VCGDVGFGKTEVAMRAAFFAVQARRQVAILAPTTVLTFQHFETFKKRFEGWPVDIRVLNR
FITPAESKKTIQDIKDGKVDIIVGTHKLLGSSIGFKDLGLLIIDEEQKFGVTHKEKIKKI
KTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDEETIRKAITAE
ISRGGQVYFIHNRIESIYGLADEIRSIVPEARIKVAHGQMEEHELEKAMLSFFHHEIDVL
ICTAIVESGMDVPRANTMFIDSAHMFGLSQLYQLRGRVGRSKTRAYCYLMMPRNRKLDKE
QQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNSVGYELYMDLLNEALAE
AKGEKVEDMELDPEINLKIPALIPDAYIKDIRIRLGYYKALAEITSNEDLDRIEEELRDQ
FGPIPDQTLNLMGLMLIRRQCKELGVRDISAGVTSISLVFTEKTKLDPTRVIQLAMKEAK
KYSITPDNRLNIKMANISWSAVHEEMERLLSLI
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgaaatgactcatacaaggctcgaatcgatacttgatcgcgccttcgaaaca
acccgcggaaaaattcaagtgaccggagcttcttctccgctcgcgttggctttctttttg
tctcagacttactctaaaaaaatcaacggcttgccgcacttagttgtagttggcagtcag
gcagaagcactgaaattacagcaactcctacagttctttgacccacttcgtcagagcaca
gttctaccggcatttgatgtttccgcgtattcaggtctctatccaaacacgagatctgcc
gcggatcgtgtgcgttttctcgcgaaagcacaggctgcaaaggccggagaaatcttcatc
gcatcacctgacgcgctggttcagaaaacaattccggtcaaaattctcaaagaaaactcg
cgaaccctgtcagttggcgatgagttgccggaagacatcgccgattatttgaactctttg
gggtatgtttccgcaccgatggttgaagacaagggtcagtatgctttacgtggaggtatc
gttgatattttcccaccaagcgaagatgcacccgttcgtttagatttattcggcgatcaa
gttgaaactcttcgccactttagcgtcgatgatcagcgcagctcagatgaaatcaaatct
ttcgtactgacgcccgctcgcgaaattctattccgcgatgaaactcatgaacgacttttg
caaagagtgcgcgcgaacatcgatgaccgcccggttgaaaaagccgaggccgatgaaatg
ttacgctcgttggttttaaagaattcttttccgggaatcgagttcttgttgccgtatttt
tacggagagccggcaagtcctgtggaccattttccaaatcccatcaatgtgtggttcctg
gatccagtagagatctccagaagtgccgacgaaaacatggccgagcttaaagcggactat
gcgacgagctcaagtcatgtgattcgtcctgacatggatttgttgtttcaaaattttgaa
accattacttatcccgaaaacagccgtcagatttatttctcaactttagaatacctggat
gccgacaatgcagcagaggctcatgtcgagtatcgcacatctctgactcaggatttttct
aatctttctaattctaatcccgtcggttctgagttgtggcttcaggctgcaacgaacaaa
cttcataagtggcgagatgacggctaccgcattttcgtcagcaccaagaatcaatcccac
attgatcgtctgtcattgatatttgaaaaactagaactgaaagccgtacgttgtgggcag
gatgaatataaatgggatacgtggctgcaagatcaggattcagacaagcaccttgttcat
atcgtaagccgctatctatctgacagcttaagacttgacgaagagcgcgtgatctttcta
cgcgatgaagatttttacggcaagaaaatgcgcagccgtgaatccacggccgcccaagac
tttcaaaagcaggctaagcgcctggcatttggtgatttaaaacccggtgatttagttgtt
cacgttaaacacggtgttgggatctatgagggtcttaagatcatggcgatcggcggagtg
gagtctgagttcattcaagtcggctttaaagataaggataagctttatctgcctgtctac
cgcgtgggacagttgcaaaagttctctggagctggtgccacgactgttttggataaacta
ggtggaactgcctgggaaaaaaccaaagcaaaagttaaatcccacgttcgcgatatcgcc
gccgacctgttagcactttatgcaaaacgtgcagagatgcaccgcccaccatttgatttt
aaagaaaatgaaattcaacttttcgaaaatggcttcccttacgaagaaactaatgatcag
ttgcgtgccatcggcgatatcctgagcgatttaaaatccacaaagcctatggaccgctta
gtctgtggcgacgttggatttggtaaaacggaagtcgcaatgcgggcagctttctttgct
gtccaggctcgtcgtcaagtcgcgattcttgctcctacaaccgttctgactttccaacac
tttgaaacatttaaaaaacgctttgaaggctggcctgttgatattcgcgttctgaacaga
tttataacgccggctgaatcaaaaaaaacaattcaagatattaaggacggtaaagtcgat
atcatcgtaggtactcacaagcttttaggaagctccattggatttaaggacttgggactt
ctaattatcgatgaagagcaaaagttcggcgttactcacaaagaaaaaatcaaaaaaatt
aaaaccagtgttgataccctcacgttgtcggcaacaccgattccccgaactttaaatatg
gcactggttggtattcgggatttaagtcttatcaacaccgcaccagtggatcgtttgccg
actcgtacttttgttactaagtttgatgaagaaactattcgcaaggcgattactgcggag
atttctcgcggtggccaggtttactttattcataatcgtatcgaatccatctatgggttg
gctgacgaaatcagaagcatcgtccctgaggcacgtattaaagtcgcccacggtcagatg
gaggagcacgaactcgaaaaagcgatgctttcattcttccatcacgagattgacgtttta
atttgtacagcgatcgtcgaatccggaatggacgtaccgcgtgcaaatacaatgttcatt
gattccgcccacatgtttggtttgtctcagctttatcaattgcgtggtcgcgtgggtcgt
tcaaaaacccgtgcctattgctatttaatgatgccgcgaaaccgcaagctcgataaagag
caacaagaacgcttaaaaatcattcaagagaacaccgctctgggcagtggtattaagatc
gcgcagtacgatttagaacttcgcggttccggaaatattctgggcgaggaacaatcgggg
cacgtaaactctgtcggttatgaactatatatggatcttttaaatgaagccttggccgaa
gctaagggtgaaaaagttgaagatatggagcttgatcctgaaatcaatcttaagatccca
gctttaatccctgatgcatatatcaaagacattcgcatccgcttgggctactataaggca
cttgccgaaatcacttctaatgaagatctcgatagaattgaagaagaactgcgcgatcag
ttcggaccaatccccgatcaaacattgaatttaatgggtctgatgctcattcgtcgtcag
tgtaaggaacttggtgttcgcgatatcagcgcgggtgttacttcgatctcattagtattc
accgaaaaaacaaaattagatccaacacgtgtgattcaattggcgatgaaggaagcaaaa
aaatattccatcactcctgataatcgcctgaatatcaaaatggcaaatatctcgtggtca
gcagttcacgaggaaatggaaagacttttaagtctgatttag
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