KEGG   Betaproteobacteria bacterium UKL13-2: AEM42_06855
Entry
AEM42_06855       CDS       T04342                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
beb  Betaproteobacteria bacterium UKL13-2
Pathway
beb02024  Quorum sensing
beb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:beb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AEM42_06855
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AEM42_06855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:beb03019]
    AEM42_06855
   03036 Chromosome and associated proteins [BR:beb03036]
    AEM42_06855
Messenger RNA biogenesis [BR:beb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AEM42_06855
Chromosome and associated proteins [BR:beb03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AEM42_06855
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AMS32188
LinkDB
Position
1521718..1521960
AA seq 80 aa
MSAKGQLLQDPFLNVLRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLKNTVTQMVYKHAI
STVVPARAVSIPFDAPAGDN
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtgcaaaagggcaactgttacaagacccgttcctgaatgttttgcgtaaggaacac
gttcccgtttcaatctacctcgtaaacggcatcaagctgcagggtcagatcgaatcattc
gatcaatacgtcgtgctgctcaagaataccgtcacccaaatggtttacaagcacgcgata
tcgactgtcgttccggcgcgtgccgtttctattccgttcgacgcacctgctggcgacaat
taa

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