Betaproteobacteria bacterium UKL13-2: AEM42_06855
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Entry
AEM42_06855 CDS
T04342
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
beb
Betaproteobacteria bacterium UKL13-2
Pathway
beb02024
Quorum sensing
beb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
beb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AEM42_06855
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AEM42_06855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
beb03019
]
AEM42_06855
03036 Chromosome and associated proteins [BR:
beb03036
]
AEM42_06855
Messenger RNA biogenesis [BR:
beb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
AEM42_06855
Chromosome and associated proteins [BR:
beb03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
AEM42_06855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AMS32188
LinkDB
All DBs
Position
1521718..1521960
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AA seq
80 aa
AA seq
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MSAKGQLLQDPFLNVLRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLKNTVTQMVYKHAI
STVVPARAVSIPFDAPAGDN
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaaaagggcaactgttacaagacccgttcctgaatgttttgcgtaaggaacac
gttcccgtttcaatctacctcgtaaacggcatcaagctgcagggtcagatcgaatcattc
gatcaatacgtcgtgctgctcaagaataccgtcacccaaatggtttacaagcacgcgata
tcgactgtcgttccggcgcgtgccgtttctattccgttcgacgcacctgctggcgacaat
taa
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